Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26880 294 / 4e-100 AGL26 AGAMOUS-like 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G064500 [exp] 322 / 7e-111 AT5G26880 333 / 4e-116 AGAMOUS-like 26 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF00588 [flax] [poplar] SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence Show only first row Show all	>Lus10015701 pacid=23147254 polypeptide=Lus10015701 locus=Lus10015701.g ID=Lus10015701.BGIv1.0 annot-version=v1.0 ATGGAAGCAACCGCCGGTCTAAAAGCCCTAAACGCCATACTACCTCTTCACTTCATCTCTTCGAAATCCCCAATTCTTCTCCGCCGCCCTATCAATTTCA TCCGCCAGCCCAATCCATCTTGCCGCCGTAGTAGTCTCCGTGCATTCTGCTCTCTGCGGTCTGAAAATGGACACTCTTTACCACGCGGAGCAGGTGAAGC CGTGTGTGGTGATGCTGATGCCTCAAGGAGAAAGCTTCTCCAAGTCGTACTAGTCTCTCCTCAGATTCCAGGGAACACAGGGTGCATTGCTAGAACATGT GCGGCATCAGGCGTTGGCCTACACTTAGTTGGGCCTTTAGGATTCCAAATCGACGATACAAAGCTAAAGCGTGCTGGACTCGATTACTGGCCGTATCCTT ATAACGATTTGGCTTTTCGTTACTTACTCGTATCGGCTCTTCGCCCTTGTGTAATGCCAAATAGTTCACTGTTTTCCGGATTTAACTTCAATGAGATAAG ATATGTCGTAGTGAAGATTCATGACTCTTGGACAGAATTCCGGGAGTATTTCAACCAACAGGAAGGTGAGAAGAGACTACTAGCACTCACTAAACGAGGG ACGAAAACTCACTCTGAATGCTCGTACAGGAAGGGAGACTATCTGGTATTTGGGGCCGAAACATTCGGGCTGCCACCCGAAGCATTGGAAGACTGCAAGG ACGAGACTTTCGGGGGTGGGACCATTCGGATACCAATGGTTGAAACGTACGTGAGATGTCTGAACCTATCGGTGAGCGTTGGCATTGCATTGTACGAGGC TGCTAGACAGCTGAACTACGAACAGCTGAACCCGTCGGAAACACACGTAGTCGTCGATGGAGAGGAATCGATAAAAAGGGAGGATATCTTTGCCTGA
AA sequence Show only first row Show all	>Lus10015701 pacid=23147254 polypeptide=Lus10015701 locus=Lus10015701.g ID=Lus10015701.BGIv1.0 annot-version=v1.0 MEATAGLKALNAILPLHFISSKSPILLRRPINFIRQPNPSCRRSSLRAFCSLRSENGHSLPRGAGEAVCGDADASRRKLLQVVLVSPQIPGNTGCIARTC AASGVGLHLVGPLGFQIDDTKLKRAGLDYWPYPYNDLAFRYLLVSALRPCVMPNSSLFSGFNFNEIRYVVVKIHDSWTEFREYFNQQEGEKRLLALTKRG TKTHSECSYRKGDYLVFGAETFGLPPEALEDCKDETFGGGTIRIPMVETYVRCLNLSVSVGIALYEAARQLNYEQLNPSETHVVVDGEESIKREDIFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26880		AGL26	AGAMOUS-like 26 (.1.2)		Lus10015701 [exp]	0	1
AT5G10620			methyltransferases (.1)		Lus10020175 [exp]	1.4	0.9260
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10032165 [exp]	1.7	0.9290
AT5G23690			Polynucleotide adenylyltransfe...		Lus10036013 [exp]	4.5	0.9083
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	7.9	0.8578
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	8.1	0.8947
AT4G14385			unknown protein		Lus10021187 [exp]	9.2	0.8811
AT1G76405			unknown protein		Lus10025160 [exp]	9.7	0.8462
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10004319 [exp]	10.5	0.9194
AT5G02710			unknown protein		Lus10003988 [exp]	10.7	0.8715
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10009166 [exp]	15.8	0.9020

Compare expression of checked genes

Lus10015701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.