Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032804 [exp] 359 / 1e-128 ND / Lus10010402 [exp] 333 / 2e-118 ND / Lus10012087 [exp] 330 / 4e-116 AT1G17930 57 / 4e-09 Aminotransferase-like, plant mobile domain family protein (.1) Lus10008255 [exp] 263 / 2e-86 AT1G48120 49 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1) Lus10003272 [exp] 253 / 2e-86 ND 39 / 0.002 Lus10000801 [exp] 234 / 3e-77 ND / Lus10007197 [exp] 201 / 2e-67 ND / Lus10017181 [exp] 189 / 3e-62 ND / Lus10005203 [exp] 189 / 3e-62 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10015702 pacid=23147222 polypeptide=Lus10015702 locus=Lus10015702.g ID=Lus10015702.BGIv1.0 annot-version=v1.0 ATGGATTCCCGTGATGTTTGTTGGCTTCCTTTTGGACCTCATCCCGACATTGAGGTCCCCGCCACGACCTACCGTGGTCTCCTACGTTGCGCCGATGTTG GGGAGTTCTACGATTCTTATCGTGTGCTCCGACAGTTTGGCTACACACAGGTCGTCCCCCCCTCGATCCCTGTGCCGCTACGGGCCGTTAGGCCCAAATC TATCAGGACATATGCCGTCCAGTGGGCCCCGGCAGATGATAGGATGTGGTTGGAGCAGGACTTCATCAGATTTCACCGGCTACACCTTATGTTCGAGAGG GCGTCGGCTGGTGGGGATGTTGGTCCAGGGTACATGGAGTGGTTCCTCGAGCATAGTCACCCACGCATCGTGGCCCCGGCTAACCCCGGTGTTGGAGTTC CGGCTGAGCTGATTACACAGCGAGTGTTCGATGGTATGGCCTCCTACTTCGATGGTACGCTTGGGCGGCAGCACGCAGACTCTCCTCAGGAGTACTACGA CCACATGGAGGGGCTTCGGGTGCAGTTTGAGGATCTGTATACGGGGTATCGGAGCCAGAGAGAGGGTTAA
AA sequence Show only first row Show all	>Lus10015702 pacid=23147222 polypeptide=Lus10015702 locus=Lus10015702.g ID=Lus10015702.BGIv1.0 annot-version=v1.0 MDSRDVCWLPFGPHPDIEVPATTYRGLLRCADVGEFYDSYRVLRQFGYTQVVPPSIPVPLRAVRPKSIRTYAVQWAPADDRMWLEQDFIRFHRLHLMFER ASAGGDVGPGYMEWFLEHSHPRIVAPANPGVGVPAELITQRVFDGMASYFDGTLGRQHADSPQEYYDHMEGLRVQFEDLYTGYRSQREG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015702 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	4.2	0.9361
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040327 [exp]	5.7	0.9113
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	6.2	0.9353
					Lus10032472 [exp]	7.7	0.9351
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	8.5	0.9324
AT5G27870			Plant invertase/pectin methyle...		Lus10037489 [exp]	10.6	0.9239
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	10.7	0.9246
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	11.0	0.9258
AT1G01440			Protein of unknown function (D...		Lus10001910 [exp]	11.7	0.8577
AT5G15430			Plant calmodulin-binding prote...		Lus10015733 [exp]	12.6	0.9118

Compare expression of checked genes

Lus10015702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.