Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52120 412 / 4e-141 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) AT4G16200 48 / 6e-06 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT5G10800 45 / 0.0002 RNA recognition motif (RRM)-containing protein (.1) AT5G25060 44 / 0.0003 RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037485 [exp] 833 / 0 AT3G52120 457 / 3e-158 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10025704 [exp] 47 / 3e-05 AT1G14650 346 / 4e-114 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10035958 [exp] 46 / 6e-05 AT1G14650 886 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10015391 [exp] 43 / 7e-05 AT1G14650 119 / 4e-32 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10032646 [exp] 46 / 8e-05 AT5G55100 499 / 3e-164 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10026892 [exp] 45 / 0.0001 AT5G25060 1271 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10043105 [exp] 42 / 0.0008 AT5G55100 504 / 1e-165 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G269900 [exp] 512 / 2e-180 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.009G064600 [exp] 495 / 1e-173 AT3G52120 509 / 1e-179 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.006G265700 [exp] 44 / 0.0003 AT5G25060 1182 / 0.0 RNA recognition motif (RRM)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain CL0449 [flax] [poplar] PF01805 [flax] [poplar] Surp Surp module
Representative CDS sequence Show only first row Show all	>Lus10015703 pacid=23147216 polypeptide=Lus10015703 locus=Lus10015703.g ID=Lus10015703.BGIv1.0 annot-version=v1.0 ATGGACAAGCAAGCACCTTCGAGTCTTTTTGTTAATGACGGTTCATTCATGGAGAGGTTCAGACAACTTCAGCAAGACAATGGGAAGGACCAAGAGAAAG ATAAGGGACCGAGTACAGCAGAGAAGGAGTCCAGACCCAAGCCAATCATTACGGGGTCTGTGACGCCTAAACCTTCTGTTGGTAAGATAAGCATGCAGTT GAAGGGCAGTGATGGACGCAATAGTGTGCAGTCTGCATCTGGTGGAAAACTTGCTTTCAGTTTGAAACAGAAGTCGAAGATTGTGGCTCCTGCAGTCCAG TTGGGTGCAGATGAAGATGACGAAGATGAAGTAGATGCTGGGAATCTATCAAGTGACATACCAGCTAAAAGACAAAAGTTGGGGCGAGTGGATGCCTCTG AACAGTCATCTAGACAAGTGGATGTTGGTAATGACTGCTTATACATATGTTATAGTGAGGGTGTGAATAGGTGGCCTTTTGGGTTTCTTGGTGCCTTGGA CATCTTGGTAGACAGAAACGCACAGTGCTTAGTTCTTCTAACACCAACTTCCCCAAGTGACCCTACAGTGAAGAAAGTTGCAGACAAGTTGGCAAGTTTT GTTGCCAAAAATGGGAGGCAGTTTGAAAGTGTCACTCGCCAGAAGAATCCAGGAGATACCCCATTCAAGTTTCTGTTTGATAAAACATCTCCTGACTATA AGTATTATGAATTCCGACTTGCTGAAGAGGAAAAGATTCTTGGTCAGACTAAAGATTCTGACAAACATGCTGGGGCTACAAGCACATCGACCTTGAAATT GGTTAATTCCCAAAGATCACATCAGCAGCAACCGAATTATCAAATCCCTGCTTCAGCTTTATATGGAGCCACGGAGGACTCTAGGATATCTGAACAGGCA GGTGAATATAATGCACCACCAACTGATCCTATAGCAATGATGGAGTTCTACATGAAGAAAGCTGCTCATGAAGAGAAACGGAAACAGCCCAGACAGTCCA AGGATGAAATGCCACCACCAGCTTCCCTTCAAGGTGCAGGTCCTCCAAAGAGAGGTCACCATATGGGTGATTACATCCCTCCAGAAGAGCTTGCAAAGTT CATGGCTTCCTGCAATGATGCTGCTGCCCAGAAAGCTGCTCAAGAGGCAGCAGAAAGAGCCCGGATCCAGGCTGACAACGTCGGGCATAAGCTGTTGTCC AAAATGGGCTGGAGAGAAGGTGAGGGTCTGGGAAGCTCAAGGAGTGGAATTGCTGATCCAATCATGGCTGGAAACATAAAGAAGGACAACTTGGGTGTTG GAGCTCAGCAGCCCGGCGAAGTGGCGCCCGAGGATGACATCTATGAGCAGTACAAGAAGCGAATGATGCTCGGTTATCGCCATAGGCCGAATCCTCTGGC GAGGTTGAGTTTGAACTTGAACTAA
AA sequence Show only first row Show all	>Lus10015703 pacid=23147216 polypeptide=Lus10015703 locus=Lus10015703.g ID=Lus10015703.BGIv1.0 annot-version=v1.0 MDKQAPSSLFVNDGSFMERFRQLQQDNGKDQEKDKGPSTAEKESRPKPIITGSVTPKPSVGKISMQLKGSDGRNSVQSASGGKLAFSLKQKSKIVAPAVQ LGADEDDEDEVDAGNLSSDIPAKRQKLGRVDASEQSSRQVDVGNDCLYICYSEGVNRWPFGFLGALDILVDRNAQCLVLLTPTSPSDPTVKKVADKLASF VAKNGRQFESVTRQKNPGDTPFKFLFDKTSPDYKYYEFRLAEEEKILGQTKDSDKHAGATSTSTLKLVNSQRSHQQQPNYQIPASALYGATEDSRISEQA GEYNAPPTDPIAMMEFYMKKAAHEEKRKQPRQSKDEMPPPASLQGAGPPKRGHHMGDYIPPEELAKFMASCNDAAAQKAAQEAAERARIQADNVGHKLLS KMGWREGEGLGSSRSGIADPIMAGNIKKDNLGVGAQQPGEVAPEDDIYEQYKKRMMLGYRHRPNPLARLSLNLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	0	1
AT4G39230			NmrA-like negative transcripti...		Lus10026351 [exp]	1.4	0.8815
AT1G01770			unknown protein		Lus10036349 [exp]	1.4	0.8893
AT5G43680			unknown protein		Lus10004356 [exp]	4.2	0.8298
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10004970 [exp]	5.9	0.8347
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	6.5	0.8609
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	6.6	0.8543
					Lus10009515 [exp]	8.1	0.8351
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	8.7	0.8503
AT5G03450			Transducin/WD40 repeat-like su...		Lus10026534 [exp]	9.5	0.8009
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	9.8	0.8336

Compare expression of checked genes

Lus10015703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.