Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42280 166 / 7e-48 bHLH bHLH130 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G51140 161 / 1e-45 bHLH bHLH122 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G43140 129 / 1e-34 bHLH bHLH129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G05805 128 / 2e-33 bHLH bHLH128 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G35460 119 / 3e-31 bHLH bHLH080 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09180 116 / 4e-30 bHLH bHLH081 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G24260 79 / 5e-16 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 77 / 2e-15 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 76 / 3e-15 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT5G50915 74 / 1e-14 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037484 [exp] 556 / 0 AT2G42280 191 / 2e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031255 [exp] 159 / 3e-47 AT2G42280 172 / 5e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031826 [exp] 159 / 2e-45 AT1G51140 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025518 [exp] 139 / 1e-37 AT1G05805 242 / 2e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021023 [exp] 141 / 5e-37 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10026733 [exp] 117 / 2e-31 AT2G43140 179 / 2e-56 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10023829 [exp] 101 / 1e-23 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10014726 [exp] 75 / 1e-15 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021846 [exp] 77 / 2e-15 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G064700 [exp] 251 / 9e-80 AT2G42280 225 / 5e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G270000 [exp] 216 / 1e-66 AT2G42280 198 / 7e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G050500 [exp] 200 / 7e-61 AT2G42280 296 / 2e-98 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G207200 [exp] 188 / 1e-55 AT2G42280 221 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G017300 [exp] 182 / 9e-54 AT1G51140 237 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G057600 [exp] 178 / 7e-53 AT2G42280 278 / 3e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.002G231700 [exp] 137 / 5e-37 AT1G05805 274 / 6e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G150600 [exp] 136 / 8e-37 AT1G05805 265 / 1e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G107500 [exp] 125 / 1e-33 AT1G35460 223 / 1e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G079900 [exp] 121 / 7e-32 AT1G35460 228 / 1e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10015704 pacid=23147256 polypeptide=Lus10015704 locus=Lus10015704.g ID=Lus10015704.BGIv1.0 annot-version=v1.0 ATGAGTATGATTTACAGTCCGAATCTCAAGTACCCAGATGGCGAATTGGGGATCAAGAACGGTTTCCAGCTGGATCATCATCAGTTTCCTCTGGATCTCA GCCCTAATTTCAGCAACGCTAATTACAATCAGGGCAATAATTCAGGGCTGGCTCGTCTCAGATCCGCCCCAAGCTCATTCCTAGCGGATCTCGTCAATGG CGGCTGCTCTTCTGATTCATTGGGATTCGACGATTTCCGATTCTTCCGGCCGCCGAGTCCCGACATCGACGCCATATTCGGTGAGTTGCAGGGGTTCGGA GAGGCGGCGGTGAAGAAAGAAGCTTCCGATTCGGAAATCGGAAGTTTCCAGCAGAATAATAATTTGGGGGGTGATCGGACGGCGTTGTCTTGTATGGATA CGACAACATTCAGCAGCATTTTAGGATCTTCTTCTTCTTCTTCTTCTGCGTTTGCTGCTGGTGGTGGTAATGGATCGAATCTAGCTCGACATAATAGCTC GCCTGCTGGATTCTTCTCCAGCATCGTCGTTGAAAATGGGTTCCATGGAGTTGGGGAAGCCAATAATCCATCATCAAGGAGCAACAGTGGTAGTAAGTTA AGAAGGAGTACACAGTTGCCTAAGATTTCTGAAATTGGGGAGGAAACTTTCCTTAGCACAACAAACTCCAGCTCTGGGAAAAGACCTTATTCTTCATCAG TCAACATCTCATGGGACAATGCTTCTTGGAGTACTGGACACAAGAAACTAAAGCAGGATCGCCATGACGATGATGATTTCGACTTGTTTGCACTGGACAA TCTCCAGCAGCAGAATGGGGGAAACCGGTTGACTCACCATTTAAGCCTGCCTAAAACTGCTGCTGAGATGGAATCAATAGAGAAGTTCTTGCAGCTTCAA GGTGGTGCCGTGCCTTGCAAGATTCGAGCTAAGCGAGGTTTCGCGACTCACCCACGAAGCATTGCTGAGAGGGTGAGAAGGACGAAAATAAGCGAAAGAA TGAGGAAACTGCAGGAGCTTTTCCCCAAAACAGACAAGCAAACAAATACATCGGAGATGTTAGATATGGCAGTTGATTACATCAAAGACCTGCAGAAACA AGTCCAGAGCTTGAGGGATACAAAAGCCAGATGCACATGTTTGAGGGAACACACAGCATAA
AA sequence Show only first row Show all	>Lus10015704 pacid=23147256 polypeptide=Lus10015704 locus=Lus10015704.g ID=Lus10015704.BGIv1.0 annot-version=v1.0 MSMIYSPNLKYPDGELGIKNGFQLDHHQFPLDLSPNFSNANYNQGNNSGLARLRSAPSSFLADLVNGGCSSDSLGFDDFRFFRPPSPDIDAIFGELQGFG EAAVKKEASDSEIGSFQQNNNLGGDRTALSCMDTTTFSSILGSSSSSSSAFAAGGGNGSNLARHNSSPAGFFSSIVVENGFHGVGEANNPSSRSNSGSKL RRSTQLPKISEIGEETFLSTTNSSSGKRPYSSSVNISWDNASWSTGHKKLKQDRHDDDDFDLFALDNLQQQNGGNRLTHHLSLPKTAAEMESIEKFLQLQ GGAVPCKIRAKRGFATHPRSIAERVRRTKISERMRKLQELFPKTDKQTNTSEMLDMAVDYIKDLQKQVQSLRDTKARCTCLREHTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10015704 [exp]	0	1
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10033955 [exp]	15.6	0.8564
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10034245 [exp]	22.0	0.8293
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10026032 [exp]	24.5	0.8159
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	29.0	0.8203
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10036141 [exp]	36.7	0.7603
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10004970 [exp]	37.5	0.7881
AT3G61680			alpha/beta-Hydrolases superfam...		Lus10009811 [exp]	38.3	0.8328
					Lus10014739 [exp]	45.7	0.8238
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039454 [exp]	62.0	0.7938
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	66.2	0.7689

Compare expression of checked genes

Lus10015704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.