Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75030 207 / 9e-67 ATLP-3 thaumatin-like protein 3 (.1) AT1G75040 202 / 3e-65 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G75050 202 / 4e-65 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 201 / 2e-64 Pathogenesis-related thaumatin superfamily protein (.1) AT1G73620 197 / 7e-63 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 191 / 2e-60 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 191 / 4e-60 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G75800 187 / 4e-58 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 186 / 2e-57 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G20030 184 / 5e-57 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037483 [exp] 380 / 2e-133 AT1G75030 242 / 3e-79 thaumatin-like protein 3 (.1) Lus10032726 [exp] 209 / 1e-67 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10013561 [exp] 200 / 5e-63 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 196 / 7e-62 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10009058 [exp] 191 / 1e-60 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017266 [exp] 192 / 5e-60 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10041901 [exp] 192 / 5e-60 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 183 / 3e-56 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10023897 [exp] 178 / 2e-55 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040700 [exp] 207 / 6e-67 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.005G241000 [exp] 202 / 5e-64 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.005G112700 [exp] 201 / 8e-64 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020400 [exp] 196 / 9e-62 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.015G039200 [exp] 192 / 1e-60 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020500 [exp] 191 / 2e-59 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.012G047800 [exp] 187 / 4e-59 AT1G73620 379 / 3e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G240900 [exp] 187 / 4e-58 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G173200 [exp] 186 / 1e-57 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 186 / 2e-57 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10015705 pacid=23147210 polypeptide=Lus10015705 locus=Lus10015705.g ID=Lus10015705.BGIv1.0 annot-version=v1.0 ATGGAACATTCTTCCCATGCCATCACCTTATTCCTCTTCTTGGTTTTCATCTCTTCCTCATCAGTTGCCAATGCTGTGATTTTCACCCTCGAAAACCGGT GCAACACCACCACATGGCCTGCCACGCTCTCCGGAAGAGGGCCTCTACTCATCGACGGAGGCACAGAACTATCCCCTGGTGAGTCGATCACCTTCACTGT CCCACCTCGATGGTCAGGACGGTTCTGGCCCCGCACAGGGTGCAGTTTCCATTCCAACACCACCAACACCACAGGTACGCCAGTGAAATGCTCGACTGGT GACTGTGGTGGTGGGTTGTTGGAATGCAGGGGAGCTGGTGGCCAGCCACCAGCAACGATCGCTGAGTTCACACTCGATGAAGACATTGATTTCTACGATG TCAGCCTTGTCGACGGATTCAACATCCCTGTCTCTATATACGCTTCTGGCGGGACTGGATCAGACTGCAGGAAAGTCGAGTGCTTTACGGACCTGAACAA GAGGTGTCCGAAGGAACTGCAGGTGTTGGATCACGGAGGTGGGCGAGTTGTGGCATGTAAGAGTGCTTGCACCGCTTACAATACTCCCCAGTACTGCTGC ACCGGGGAGTATGGAAGCCCTCAGAGCTGCAAGCCTACGGATTTTTCGAGAATGTTTAAGGATGCGTGTCCAAGCTATTACAGCTATGCTTACGATGATG CGACCAGTATCTTCACTTGTAGAGGAAACGCCGATTATTTGATCAGATTCTGTTGA
AA sequence Show only first row Show all	>Lus10015705 pacid=23147210 polypeptide=Lus10015705 locus=Lus10015705.g ID=Lus10015705.BGIv1.0 annot-version=v1.0 MEHSSHAITLFLFLVFISSSSVANAVIFTLENRCNTTTWPATLSGRGPLLIDGGTELSPGESITFTVPPRWSGRFWPRTGCSFHSNTTNTTGTPVKCSTG DCGGGLLECRGAGGQPPATIAEFTLDEDIDFYDVSLVDGFNIPVSIYASGGTGSDCRKVECFTDLNKRCPKELQVLDHGGGRVVACKSACTAYNTPQYCC TGEYGSPQSCKPTDFSRMFKDACPSYYSYAYDDATSIFTCRGNADYLIRFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	0	1
AT5G17820			Peroxidase superfamily protein...		Lus10005681 [exp]	1.4	0.8927
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	2.4	0.8905
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10029205 [exp]	2.4	0.8869
AT4G05400			copper ion binding (.1.2)		Lus10031070 [exp]	3.3	0.7992
					Lus10018716 [exp]	4.2	0.8342
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031748 [exp]	4.5	0.8023
AT5G17820			Peroxidase superfamily protein...		Lus10020311 [exp]	4.6	0.8156
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10034393 [exp]	6.3	0.8384
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10024075 [exp]	7.5	0.8420
AT5G42120			Concanavalin A-like lectin pro...		Lus10042795 [exp]	7.9	0.8050

Compare expression of checked genes

Lus10015705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.