Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50560 166 / 5e-48 CYP705A25 "cytochrome P450, family 705, subfamily A, polypeptide 25", cytochrome P450, family 705, subfamily A, polypeptide 25 (.1) AT1G50520 162 / 1e-46 CYP705A27 "cytochrome P450, family 705, subfamily A, polypeptide 27", cytochrome P450, family 705, subfamily A, polypeptide 27 (.1) AT4G15350 160 / 1e-45 CYP705A2 "cytochrome P450, family 705, subfamily A, polypeptide 2", cytochrome P450, family 705, subfamily A, polypeptide 2 (.1) AT3G20940 159 / 3e-45 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1) AT3G20950 157 / 1e-44 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1) AT5G47990 156 / 3e-44 THAD1, THAD, CYP705A5 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) AT3G20140 154 / 1e-43 CYP705A23 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1) AT3G20080 150 / 6e-43 CYP705A15 "cytochrome P450, family 705, subfamily A, polypeptide 15", cytochrome P450, family 705, subfamily A, polypeptide 15 (.1.2.3) AT3G20130 151 / 1e-42 GPS1, CYP705A22 gravity persistence signal 1, "cytochrome P450, family 705, subfamily A, polypeptide 22", cytochrome P450, family 705, subfamily A, polypeptide 22 (.1.2) AT3G20100 150 / 7e-42 CYP705A19 "cytochrome P450, family 705, subfamily A, polypeptide 19", cytochrome P450, family 705, subfamily A, polypeptide 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035502 [exp] 143 / 3e-39 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10023827 [exp] 134 / 7e-36 AT2G42250 652 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Lus10027798 [exp] 122 / 1e-32 AT5G06900 349 / 1e-117 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 119 / 1e-30 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10005878 [exp] 119 / 1e-30 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10019463 [exp] 113 / 5e-30 AT3G26270 217 / 1e-67 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) Lus10034230 [exp] 117 / 1e-29 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10034502 [exp] 115 / 2e-29 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10043313 [exp] 115 / 4e-29 AT3G48280 390 / 3e-131 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065000 [exp] 215 / 9e-67 AT5G47990 425 / 1e-144 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.009G066300 [exp] 205 / 9e-63 AT3G20140 419 / 2e-142 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1) Potri.001G270900 [exp] 202 / 1e-61 AT5G47990 419 / 2e-142 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.009G066200 [exp] 201 / 3e-61 AT4G15350 410 / 7e-139 "cytochrome P450, family 705, subfamily A, polypeptide 2", cytochrome P450, family 705, subfamily A, polypeptide 2 (.1) Potri.016G052600 [exp] 154 / 3e-43 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G190800 [exp] 152 / 8e-43 AT2G42250 509 / 2e-177 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G057900 [exp] 139 / 1e-37 AT2G42250 725 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.016G049800 [exp] 133 / 1e-35 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G058200 [exp] 127 / 2e-33 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.009G065100 [exp] 123 / 1e-32 AT1G50520 283 / 1e-90 "cytochrome P450, family 705, subfamily A, polypeptide 27", cytochrome P450, family 705, subfamily A, polypeptide 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10015706 pacid=23147248 polypeptide=Lus10015706 locus=Lus10015706.g ID=Lus10015706.BGIv1.0 annot-version=v1.0 ATGAAGGGAGAATTTGGGGCCTTGGGTAAGGAGCTGATGACGCTGACTAATAATACTACGTGTAGGATGGCAATGAGCGCCAGGTGCTCGACGGAATGCG GCAATGAAGCTGAGAGGTGCAGGGAGCTGGTTAAGGGGGCACACAGCCTGACTATTAAAATGGCGGTTGCTAATCTGTTTGGTCCGCTGAGAAAGTTGGT GGTACATTTGCTATTCTGCAAGCAGGCCAAGGATTTGCCCGCTCAGTACGACGAGTTGCTGGAAGGAATTCTGAAGGAGCGTGAAGGAAGAGCAACTAAT GAAAGCTGTATATTCTTCTGCAAGCTGTTGACCGACCCAATTCTCACCCGAAATAAGTATAATAGCCGACGTACCGTTTTCATTTATGAATGCTCTGATT CCTTTCAGGATCTATTCATTGCTGGGACAAGTGCAACAGCGGATATAATGGAGTGGACAATGGCGGAGCTCCTGAACCATCCTGACATCTCCGTCAAGAG ATCATCCAGGCTACATCCGCCAGCAGTTGTGGCACCAAGGGAGTCCAGAGAGGCTTGTAAGCTAGGAGGGTTCGACATACCGAAAGGAATACCAGTGGCT GTCAATACATTCTCCATAATGCGAGATCCTGAGGTATGGGCCGATCCAGATGAGTTCTGCCCCGAGAGATTCGTGCACGATAATGGAGTAGGGATGATGG TTGCCGGTTTCATTCCGTTCGGTGGTGGGAGAAGGATGTGTCCTGGTTCGAACATCCTTATTTATTTGTACATGATTAGTAATTTTAGTACACCCCCATA G
AA sequence Show only first row Show all	>Lus10015706 pacid=23147248 polypeptide=Lus10015706 locus=Lus10015706.g ID=Lus10015706.BGIv1.0 annot-version=v1.0 MKGEFGALGKELMTLTNNTTCRMAMSARCSTECGNEAERCRELVKGAHSLTIKMAVANLFGPLRKLVVHLLFCKQAKDLPAQYDELLEGILKEREGRATN ESCIFFCKLLTDPILTRNKYNSRRTVFIYECSDSFQDLFIAGTSATADIMEWTMAELLNHPDISVKRSSRLHPPAVVAPRESREACKLGGFDIPKGIPVA VNTFSIMRDPEVWADPDEFCPERFVHDNGVGMMVAGFIPFGGGRRMCPGSNILIYLYMISNFSTPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50560		CYP705A25	"cytochrome P450, family 705, ...		Lus10015706 [exp]	0	1
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10026749 [exp]	1.0	0.9098
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10002621 [exp]	2.0	0.7585
AT2G15220			Plant basic secretory protein ...		Lus10014107 [exp]	2.4	0.8172
					Lus10039943 [exp]	4.2	0.8345
AT2G48020			Major facilitator superfamily ...		Lus10042676 [exp]	10.1	0.6903
AT5G51490			Plant invertase/pectin methyle...		Lus10027203 [exp]	11.0	0.7307
AT1G22900			Disease resistance-responsive ...		Lus10021083 [exp]	17.3	0.6497
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Lus10020477 [exp]	21.0	0.6754
					Lus10024992 [exp]	22.4	0.6694
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	23.9	0.6625

Compare expression of checked genes

Lus10015706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.