Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52140 1780 / 0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) AT4G28080 305 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15290 302 / 2e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G01320 297 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037481 [exp] 2520 / 0 AT3G52140 1894 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Lus10030259 [exp] 307 / 4e-85 AT1G01320 1731 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036604 [exp] 306 / 2e-84 AT4G28080 1357 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004009 [exp] 305 / 3e-84 AT1G01320 2014 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10035822 [exp] 293 / 4e-80 AT4G28080 2117 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G271200 [exp] 1996 / 0 AT3G52140 1842 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Potri.009G065300 [exp] 1993 / 0 AT3G52140 1758 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Potri.018G102500 [exp] 305 / 4e-84 AT4G28080 2144 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G180100 [exp] 304 / 9e-84 AT4G28080 2109 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G170900 [exp] 302 / 3e-83 AT1G01320 2033 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G031000 [exp] 301 / 5e-83 AT1G15290 1522 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G098600 [exp] 299 / 3e-82 AT1G01320 2036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015708 pacid=23147237 polypeptide=Lus10015708 locus=Lus10015708.g ID=Lus10015708.BGIv1.0 annot-version=v1.0 ATGGCTGGGAAATCTAACAAGGGGAGGAACAAGAGAGGCACAGCTAATTCTGTCAATGCTTCTGATTCAGCAGTTTCGTCTATGGCCGTTAATGCTTCTG ATTCGGTAGTGTCGTCTACTGCTCCTGTGAAGGACGATGTCATTGTTCTGGAGCCTTCTGAGATTGAGGAGACTAATGGAATAGCCGCTGTTCATGAACC TTCTGATGATAAGCCAGAGCCTGAATCTGCTGATGATAAGCCCGACGCCAAGGAGCCTGAATCTGCTGCTGATGCTGCCGGGGAACCAAAGCAGCAAGGA GATCTTCATCTCTTTGCTGTCCCTGTGAAAACACAGAGTGGGGAGAAGCTTGAGCTGCAATTGAACCCAAGGGATTCAGTCATGGACATAAGACAGTTCC TTCTTGATGCCCCTGAGACTTGCTTCTTCACTTGCTATGATTTGTTGCTGCACACAAAGGATGGGTCTTCTCATCAACTGGAAGATTATAATGAAATTTC TGAAGTAGCTGATATTACCACGGGTGGCTGCTCTTTGGAGATGGTTGCTGCCCCGTATGACGACAGATCGATCAGGGCTCACGTCCATCGCACCAGAGAA TTAATTTCACTTTCTACTCTTCACGCTTCGCTGTCTACTTCACTTGCACTGGAGTACGAGGCAGCACAAAATAAGGCTGTGGCTTCAGATGCAGTGAAAC CTGAGATTCCTGAGCTGGATGGACTAGGATTCATGGAAGATGTCTCAGATTCCCTTGGTAAATTGCTATCATCGCCATCTAAGGAGGTGAAATGTGTGGA GAGTGTTGTGTTCTCATCATTCAATCCTCCCCCAAACTATAGGAGGCTTGTTGGAGATCTCATCTACTTAGATGTGATGACATTGGAGGGTAACAAATTT TGTGTTACCGGATCAACAAGAGCATTCTATGTTAATTCTAGTGCTGGCAATGTTCTTGACCCAAACCCTGGAAAATCTACTTTTGAAGCAACCACCCTTA TTGCTTTGTTACAAAAGATAAGCTCAAAGTTCAAAAAAGCTTTTCGTGAACTCCGGGAGAAGAAGGCCTCGGCTCATCCTTTTGAAAATGTTCAGTCTCT TTTACCACCAAATTCTTGGCTAGGATTACACCCTGTACCTGACCACAGGCGAGATGCAGCCAGGGCAGAAGATGTAATAAACCTTTCATATGGAAGTGAG TTGATTGGAATGCAAAGAGATTGGAATGAGGAGTTGCAATCTTGTAGGGAATTCCCCCATACAAGTCCTCAAGAAAGGATATTGCGGGATAGGGCTCTCT ACAAAGTCACTTCTGATTTTGTTGATGCAGCAGTTAGTGGTGCTATTGGAGTCATCAGTAGATGCATACCTCCTATAAACCCAACGGATCCAGAGTGCTT CCATATGTATGTCCACAACAACATATTTTTTAGTTTTGCCGTCGATGCTGATCTTGAGCAAGTGTCTAGGAAACGTACTTCAGATATTAATGTGAAGAAG GATACCAATTCTACGTCTTCATCTGAGAAAGTCCCCAATAATGTGTCACATAGGGATGAGAGTGTTGCCTCTGTGGAAAAACCCGATGGATCTATCAGTC TAGAAACTAATGGTTCAACTGAGTTGACTTCTCCAGAGACACAATTGGCTGAGAGTGAGCAGGCAACATATGCTTCTGCCAATAATGATTTGAAGGGAAC AAAAGCTTACCAGGAAGCTGATGTCCCTGGTCTTTATAATCTCGCCATGGCGATAATCGACTATAGAGGACACCGGGTTGTTGCCCAGAGTGTTTTACCT GGAATCCTTCAAGGTGATAAGTCAGACTCGCTTCTGTATGGTTCTGTTGACAATGGCAAGAAAATATGCTGGAATGAAGATTTCCACTCCAAGGTAGTGG AAGCTGCAAAGCGCCTTCACCTAAAGGAGCATTTGGTGCTGGATGGATCTGGAAATAGTTTCAAACTAGCTGCACCTGTAGAATGCAAGGGTATTGTTGG CAGCGATGACCGGCATTATCTCTTAGACTTGATGAGAGTTACTCCCCGTGATGCCAACTACACTGGACCCGGATCCAGATTCTGCATTTTGAGACCGGAG CTGATTTCTGCCTTTTCGCAGGCTGAAGCTCTAGAGAAATCAAAGGCCAAGTCCAAAACTGAACCTGAGGCTCCTGCTATTGAAAATTCTACAGAAGTTG CTGTCTCGGACGAAAAGGAGAAATCTGCAACCTCTACTGACAATCAGGAGTTAGCTGAGGAGAAAATTGATACTGCTATAGAACACCCTGCTGTTCCTGC TGAGAGCTCTCAATTGGATGACGAAATACTTTTTAATCCTAATGTGCTCACCGAGTTCAAGTTGGCGGGGGATCCAGAGGAGATCACTAAGGATGAAGAA AATGTGAGAAGAGTTAGCTCATTTCTAGCTGATACTGTGCTTCCAAAGTTTATTCAAGATCTTTGCACGCTTGAAGTATCACCTATGGACGGGCAGACCC TTACTGAGGCACTTCATGCTCATGGAGTCAATGTTCGATATCTGGGACGGATTGCTGAGGGGACAAAACATTTACCTCACCTGTGGGATCTTTGCTCAAA TGAGATTGTAGTTAGATCTGCCAAGCATGTTCTCAAGGATTTGTTGAGAGATGTAGAAGATCACGAACTTGGTCCAGCAATCTCACATCATTTCAATTGT TTGTTTGGAAATTGCGAAGCTGTTGGCACGAAAACTTCTACTAACAGTTCCCTGACAAAATCCCCGAAGAAGGAATCTTCTGGAAAATCTAAAGGCCAAA CAAGGGTGAAAGGAGCACCTAGGAAGAATCAATCTTCATATTTGAATATTGGTTCAGAAACACTATGGTCTGAGATACGCGAGTTTGCAAAGCTCAAATA CCAGTTTGACTTGCCAGAAGATTCAGCGGTGCGCGTTCGGAAAGTCTCCGTTATCCGCAATCTTTGCCAAAAGGTGGGTATCACTATGGCAGCTCGGAAG TATGACTTCAATGCTGCTACACCGTTCCAAACATCAGATATTTTGGATCTAAGACCTGTGGTGAAGCATTCAGTTCCAGTTTGCTCTGAAGCAAAAGAGC TTGTAGAGACCGGGAAGGCGCAATTAGCAGAGGGCATGCTAAGTGAAGCCTATACATTATTCTCCGAGGCTTTCTCAATTCTTCAACAGGTTACCGGGCC AATGCATCGCGAGGTTGCCAACTGCTGCCGCTTCCACCTCTTGTTTCTCAGGTACCTTGCCATGGTTCTGTATCATGCTGGAGATATGGCTGGAGCAATA ATTCAGCAGCACAAGGAGTTAATTATAAACGAACGTTGTCTCGGCATAGATCACCCCGACACTGCTCACAGGCATTTTTCTTTTATTCCCACCTATGGGA ATATGGCTCTCTTCTACCATGGCCTTAACCAGACAGAACTCGCACTGAGACACATGTCTCGTGCATTGCTCTTACTGAGTTTGTCATCTGGCCCTGATCA TCCTGATGTTGCAGCAACGTTTATAAACGTTGCTATGATGTTCCAGGACATCGGGAAAATGAACACAGCTCTTCGGTATCTGCAAGAGGCCTTGAAGAAG AACGAGAGGCTGTTAGGCCAAGAGCATATTCAGACTGCTGTATGCTACCACGCTTTGGCTATCGCTTTCAACTGCATCGGCGCCTTCAAGCTATCACACC AGCATGAGAAGAACACATATGATATTCTCGTCAAACAACTTGGCGAGGACGATTCTAGAACACGCGATTCTCTAAATTGGATGAAGACCTTCAGGACGCG GGAGCTTCAGATGAATGCTCAGAAGCAGAAAGGCCAGGCATTGAATGCAGTTTCTGCCCAGAAGGCAATGGACATCTTGAAGGCTCATCCAGACCTCCTG CAAGCATTCCAAGCTGCAGCAACTGCTGGAGCATCAGGGAGCGGTGGCAATCCATCCGTAACCAAATCGATCAATGCAGCACTGGCTGGTGATGCCCTTC CTCGAGGAAGAGGAGTCGACGAAAGGGCTGCCCGTGCTGCTGCAGAAATCAGGAAGAAGGCAGCCGCTAGAGGGCTCTTGATCAGGCCACATGGTGTTCC TGTCCAAGCCGTGCCGCCTATGCAGCAGCTCATGAATCTCATGACGACACCCGATGCAGTCGAGGAAGGTGAGAAAACTGTGGCGAATGGTAAGCCGTCG TCTCCGGCAGCGCCGATAGAAGGACAAGAACAACAGCAGCAGGCTCCAGTTGGTCTAGGCAAAGGGTTGGGATCGTTGGATAATAAGAAAGGGAAGACAA AATCTTCTAATGCTGCAGCCTAA
AA sequence Show only first row Show all	>Lus10015708 pacid=23147237 polypeptide=Lus10015708 locus=Lus10015708.g ID=Lus10015708.BGIv1.0 annot-version=v1.0 MAGKSNKGRNKRGTANSVNASDSAVSSMAVNASDSVVSSTAPVKDDVIVLEPSEIEETNGIAAVHEPSDDKPEPESADDKPDAKEPESAADAAGEPKQQG DLHLFAVPVKTQSGEKLELQLNPRDSVMDIRQFLLDAPETCFFTCYDLLLHTKDGSSHQLEDYNEISEVADITTGGCSLEMVAAPYDDRSIRAHVHRTRE LISLSTLHASLSTSLALEYEAAQNKAVASDAVKPEIPELDGLGFMEDVSDSLGKLLSSPSKEVKCVESVVFSSFNPPPNYRRLVGDLIYLDVMTLEGNKF CVTGSTRAFYVNSSAGNVLDPNPGKSTFEATTLIALLQKISSKFKKAFRELREKKASAHPFENVQSLLPPNSWLGLHPVPDHRRDAARAEDVINLSYGSE LIGMQRDWNEELQSCREFPHTSPQERILRDRALYKVTSDFVDAAVSGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDADLEQVSRKRTSDINVKK DTNSTSSSEKVPNNVSHRDESVASVEKPDGSISLETNGSTELTSPETQLAESEQATYASANNDLKGTKAYQEADVPGLYNLAMAIIDYRGHRVVAQSVLP GILQGDKSDSLLYGSVDNGKKICWNEDFHSKVVEAAKRLHLKEHLVLDGSGNSFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTGPGSRFCILRPE LISAFSQAEALEKSKAKSKTEPEAPAIENSTEVAVSDEKEKSATSTDNQELAEEKIDTAIEHPAVPAESSQLDDEILFNPNVLTEFKLAGDPEEITKDEE NVRRVSSFLADTVLPKFIQDLCTLEVSPMDGQTLTEALHAHGVNVRYLGRIAEGTKHLPHLWDLCSNEIVVRSAKHVLKDLLRDVEDHELGPAISHHFNC LFGNCEAVGTKTSTNSSLTKSPKKESSGKSKGQTRVKGAPRKNQSSYLNIGSETLWSEIREFAKLKYQFDLPEDSAVRVRKVSVIRNLCQKVGITMAARK YDFNAATPFQTSDILDLRPVVKHSVPVCSEAKELVETGKAQLAEGMLSEAYTLFSEAFSILQQVTGPMHREVANCCRFHLLFLRYLAMVLYHAGDMAGAI IQQHKELIINERCLGIDHPDTAHRHFSFIPTYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMFQDIGKMNTALRYLQEALKK NERLLGQEHIQTAVCYHALAIAFNCIGAFKLSHQHEKNTYDILVKQLGEDDSRTRDSLNWMKTFRTRELQMNAQKQKGQALNAVSAQKAMDILKAHPDLL QAFQAAATAGASGSGGNPSVTKSINAALAGDALPRGRGVDERAARAAAEIRKKAAARGLLIRPHGVPVQAVPPMQQLMNLMTTPDAVEEGEKTVANGKPS SPAAPIEGQEQQQQAPVGLGKGLGSLDNKKGKTKSSNAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10015708 [exp]	0	1
AT1G55930			CBS domain-containing protein ...		Lus10004777 [exp]	1.7	0.9339
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10023111 [exp]	2.4	0.9453
AT1G55930			CBS domain-containing protein ...		Lus10003111 [exp]	2.8	0.9335
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	4.7	0.9382
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10035825 [exp]	5.5	0.9334
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10033331 [exp]	10.2	0.9114
AT4G39680			SAP domain-containing protein ...		Lus10019680 [exp]	10.7	0.8775
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031169 [exp]	11.7	0.9015
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Lus10026157 [exp]	12.0	0.9195
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	14.5	0.9266

Compare expression of checked genes

Lus10015708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.