Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57880 364 / 4e-120 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 363 / 1e-119 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 367 / 6e-119 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G51570 359 / 3e-118 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 335 / 3e-109 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G11610 318 / 2e-100 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 308 / 8e-97 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 288 / 1e-89 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 279 / 7e-86 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 255 / 4e-77 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012026 [exp] 365 / 1e-120 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 364 / 4e-120 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 363 / 2e-119 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 362 / 4e-119 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031816 [exp] 345 / 1e-116 AT4G11610 513 / 1e-176 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 348 / 9e-115 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 332 / 6e-106 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 315 / 2e-99 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10009460 [exp] 301 / 4e-97 AT1G22610 627 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065600 [exp] 394 / 2e-131 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 399 / 6e-131 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 365 / 2e-120 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 364 / 3e-120 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 364 / 4e-120 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 362 / 2e-119 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 361 / 5e-119 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 358 / 1e-117 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 357 / 2e-117 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 338 / 3e-108 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10015709 pacid=23147241 polypeptide=Lus10015709 locus=Lus10015709.g ID=Lus10015709.BGIv1.0 annot-version=v1.0 ATGCACCATCTTGCTGCTGCTGCAACTTCTGCAAACAGTGTAGCCTCAGGGCAGCACTACCACGGCCGCCGCAACGAAGATGATGATGATGGTGATGATG ATAACTACAGCTTGAAGGACACCAATTCACATCTAGTCAGGCAGCATTTGTGGCAATCTGGAAGACCAGGATTCAGTTCGGCGTCCGCTATGACGAAATT TGACCTGGTGGAGCAAATCTCGTACCTTTACTTCCGAGTAGTGAAAGCCAAAGACCTCCCTCCATCTTCCTCCATCGCCAACACCTGCGATCCGTACGTC GAAATCAAACTCGGCAATTACAAGGGAAGAACAAAGCATTTCGAGAAGAAATCAAATCCTGTATGGAACCAAGTATTCGCTTTCTCCAAGGACAGAATCC AATCCTCTGTTCTTGAAGTCTACGTAAAGGACAGAGATATCAAGGGAGATGATTACCTTGGTACGGTCACCTTCGATTTGAATGAAACCCCCACCAGAGT CCCGCCGGACAGTCCACTCGCCGCCCAATGGTACCTCCTCGACGGTCGCCGCCGTGGAGAGATCATGCTGGCTGTTTGGATGGGGACGCAAGCTGACGAA GCGTTTCCGGAAGCTTGGAACGCTGATTCCGTCGGAGTTAGGTCAAAAGTCTATGTCTCTCCCGAGCTGTGGTACGTCCATGTGAACGTTATCGAAGCTC AGGATCTGATTCCGATCGGCGACGGAAACCGAATCCCACAGGTGTTCGTCAAAGTTCAGATCGGGAATCAGGTTTTGAAGACGAGGATTCACCAGATCGC GACGATGAACCCGATCTGGAACGAGAATTTGATGTTTGTAGCGGCGGATCCTTTCGAGGAGCAGGTGATCGTCACCGTGGAAGATAGAGTTCATCCTTCG AAAGACGAAGTGCTCGGGAAGATCACTTTCCCCGTGGCGGCTTTCGAGAAACGGATGGATCATCGCCCCGTTTCAATCTGGAGAAGTACGGATTCGGAGG ATTTGAAGGTGATCGGAGGAAGGAGATGA
AA sequence Show only first row Show all	>Lus10015709 pacid=23147241 polypeptide=Lus10015709 locus=Lus10015709.g ID=Lus10015709.BGIv1.0 annot-version=v1.0 MHHLAAAATSANSVASGQHYHGRRNEDDDDGDDDNYSLKDTNSHLVRQHLWQSGRPGFSSASAMTKFDLVEQISYLYFRVVKAKDLPPSSSIANTCDPYV EIKLGNYKGRTKHFEKKSNPVWNQVFAFSKDRIQSSVLEVYVKDRDIKGDDYLGTVTFDLNETPTRVPPDSPLAAQWYLLDGRRRGEIMLAVWMGTQADE AFPEAWNADSVGVRSKVYVSPELWYVHVNVIEAQDLIPIGDGNRIPQVFVKVQIGNQVLKTRIHQIATMNPIWNENLMFVAADPFEEQVIVTVEDRVHPS KDEVLGKITFPVAAFEKRMDHRPVSIWRSTDSEDLKVIGGRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48060			C2 calcium/lipid-binding plant...		Lus10015709 [exp]	0	1
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	2.8	0.9561
AT3G47570			Leucine-rich repeat protein ki...		Lus10033330 [exp]	4.9	0.9534
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029112 [exp]	5.5	0.9501
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	7.6	0.9581
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	7.9	0.9579
AT5G36930			Disease resistance protein (TI...		Lus10007825 [exp]	10.8	0.9534
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	12.4	0.9552
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	14.6	0.9578
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	16.3	0.9506
AT4G37180	GARP		Homeodomain-like superfamily p...		Lus10019639 [exp]	16.4	0.9455

Compare expression of checked genes

Lus10015709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.