Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06850 364 / 2e-121 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 364 / 6e-119 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G12970 346 / 1e-114 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT3G57880 339 / 9e-112 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 338 / 2e-111 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G11610 335 / 3e-108 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 314 / 3e-100 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 296 / 2e-93 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G74720 274 / 5e-85 QKY QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 271 / 1e-84 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037479 [exp] 434 / 4e-152 AT5G48060 866 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 372 / 3e-124 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 371 / 5e-124 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 344 / 1e-113 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 344 / 2e-113 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 333 / 2e-107 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 323 / 8e-104 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10009459 [exp] 300 / 1e-102 AT1G22610 498 / 2e-170 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 308 / 2e-97 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065600 [exp] 399 / 1e-134 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 399 / 4e-132 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 377 / 2e-126 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 376 / 6e-126 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 339 / 6e-112 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G125900 [exp] 341 / 2e-110 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 334 / 6e-110 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 338 / 4e-109 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 319 / 5e-104 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 318 / 6e-104 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10015710 pacid=23147250 polypeptide=Lus10015710 locus=Lus10015710.g ID=Lus10015710.BGIv1.0 annot-version=v1.0 ATGGGCAAGCTTCATCTCGTGATTCGGTTCACTACATTGTCACTAGCCAATTTGATATCCGCGGATGGACAACCGATCCTGCCGAGGATGCACTACCTGC ATCCATTAACGGTCAACCAAGTCGAAAGCCTAAGGTACCAAGCGATGAACATCGTAGAAGTGAGGCTAGGTAGGGCAGAGCCACAGCTTCAAAAAGAAGT CGTTGAGTACATGCTAGATGTCGATTCCCACATGTGGAGCATGAGGAGGAGCAAGGTTAACTTCTTCCGGATCATGTCACTAGTTTCAGGGGCGGTCTCG ATGAGCAAGTGGTTAGACGACATTTGTCAATGGAGGAAACCTGTGACATCGGTACTAGTACACGCCCTGTTCCTGATACTAATCTGGTACCCGGAGCTGA TCCTCCCGACAATGTTCCTCTACATGTTCCTGATCGGGATCAAGAACTATAGGTTCCGCCCCAGGCACCTGCACCACATGGACAATAAGCTGTCCTGGGC GGAGGCGGTGAGCCCCGACGAGCTCGACGAGGAGTTCGACATTTTCCCTACTTCGAGGGCTCACGATCTCGTCGGGATGAGGTACGACAGGCTGAGGAGC ATCGCTGGTAGGATACAGTATGAGGTGGGGGATGTAGCGACGCAAGGTGAGAGTTTTCAGTCACTGTTGAGTTGGAGGGACCCCAGAGCTACTAGTTTGT TTCGTAGTGTTCCGTCTTTGTGCGGCTATAGTGCTTTATGTGACGCCGTTTCGAGTGGTTGCTATGGGCTCGGATTTGTACTACTTGAGGCACCCTAA
AA sequence Show only first row Show all	>Lus10015710 pacid=23147250 polypeptide=Lus10015710 locus=Lus10015710.g ID=Lus10015710.BGIv1.0 annot-version=v1.0 MGKLHLVIRFTTLSLANLISADGQPILPRMHYLHPLTVNQVESLRYQAMNIVEVRLGRAEPQLQKEVVEYMLDVDSHMWSMRRSKVNFFRIMSLVSGAVS MSKWLDDICQWRKPVTSVLVHALFLILIWYPELILPTMFLYMFLIGIKNYRFRPRHLHHMDNKLSWAEAVSPDELDEEFDIFPTSRAHDLVGMRYDRLRS IAGRIQYEVGDVATQGESFQSLLSWRDPRATSLFRSVPSLCGYSALCDAVSSGCYGLGFVLLEAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48060			C2 calcium/lipid-binding plant...		Lus10015710 [exp]	0	1
AT2G19770		PRF5	profilin 5 (.1)		Lus10037591 [exp]	1.4	0.8742
AT1G64620	DOF	AtDof1,8	Dof-type zinc finger DNA-bindi...		Lus10023032 [exp]	2.0	0.8734
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Lus10011172 [exp]	3.9	0.8222
AT5G55560			Protein kinase superfamily pro...		Lus10016594 [exp]	11.2	0.8532
AT5G53110			RING/U-box superfamily protein...		Lus10007845 [exp]	13.7	0.8683
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	19.0	0.8646
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10029458 [exp]	21.5	0.8456
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	27.9	0.8511
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10023326 [exp]	29.7	0.8286
AT5G35740			Carbohydrate-binding X8 domain...		Lus10039059 [exp]	30.9	0.8285

Compare expression of checked genes

Lus10015710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.