Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08570 211 / 4e-68 ACHT4 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) AT5G61440 210 / 8e-68 ACHT5 atypical CYS HIS rich thioredoxin 5 (.1) AT2G33270 194 / 4e-61 ACHT3 atypical CYS HIS rich thioredoxin 3 (.1) AT4G29670 157 / 2e-47 ACHT2 atypical CYS HIS rich thioredoxin 2 (.1.2) AT4G26160 149 / 3e-44 ACHT1 atypical CYS HIS rich thioredoxin 1 (.1) AT3G51030 55 / 1e-09 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT5G16400 52 / 3e-08 TRXF2, ATF2 thioredoxin F2 (.1) AT3G02730 49 / 3e-07 TRXF1, ATF1 thioredoxin F-type 1 (.1) AT1G59730 48 / 5e-07 ATH7 thioredoxin H-type 7 (.1) AT1G69880 48 / 6e-07 ATH8 thioredoxin H-type 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019087 [exp] 378 / 8e-134 AT1G08570 223 / 4e-73 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10020254 [exp] 213 / 2e-68 AT1G08570 318 / 1e-109 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10002640 [exp] 211 / 1e-67 AT1G08570 320 / 2e-110 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10026878 [exp] 208 / 1e-66 AT1G08570 332 / 7e-115 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10003437 [exp] 206 / 9e-66 AT1G08570 324 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10007994 [exp] 162 / 7e-47 AT4G29670 268 / 6e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10040554 [exp] 158 / 1e-45 AT4G29670 265 / 7e-87 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10014277 [exp] 56 / 5e-10 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10041799 [exp] 55 / 1e-09 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G031900 [exp] 211 / 2e-67 AT1G08570 325 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.013G061200 [exp] 209 / 7e-67 AT1G08570 295 / 4e-100 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.018G066500 [exp] 154 / 4e-46 AT4G29670 253 / 3e-85 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.006G150700 [exp] 153 / 7e-46 AT4G29670 259 / 9e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.005G232700 [exp] 59 / 4e-11 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.007G018000 [exp] 58 / 1e-10 AT3G51030 186 / 2e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.019G054800 [exp] 52 / 7e-08 AT3G02730 204 / 1e-67 thioredoxin F-type 1 (.1) Potri.012G045000 [exp] 52 / 2e-07 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.002G030000 [exp] 46 / 1e-06 AT3G51030 160 / 3e-52 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.014G029200 [exp] 46 / 7e-06 AT1G07700 233 / 6e-78 Thioredoxin superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10015711 pacid=23167636 polypeptide=Lus10015711 locus=Lus10015711.g ID=Lus10015711.BGIv1.0 annot-version=v1.0 ATGGAATCCATGGCTTGCTGTCCCTCTTTCAACACCCATCTCAATGTCTGTCCTCTCAACAACAACAAAAGGTCTATCCGTTACGGGTTCCGTCCCGATT CCACGGGAAGCAACAACCCGTTACTTCTCTCGGATCGAATCGGGTTCAGGGATCGACGGAGTTGCAGAAACAGAGTCAGTTCCTCTGTTCGTGCGCAAGC TTCGATCTGTGTGAGTAGAAGTAGGAGGTGGTGGGAGGACAAAGCCGCCGTGAAGCCAAACATGGTGGAAATCCAGTCAGCTCAACAGCTGGTGGATACG CTACAATGCGCCGGGGATAGATTGGTAATCATCGATTTCTACTCCCCTGGATGCGGCGGCTGTCGGACTCTCCATCCCAAGATCTGCCAAATAGCGGAGT CGAACCCGAATGCGATGTTCCTGAAAGTGAATTTTGAAGAGATGAAGACAATGTGCGAATGTCTCAACATCCGCGTCCTCCCTTTCTTCAGATTCTACCG TGGCTCCGACGGCCGCCTCTGCAGCTTAAGCTGTACCAATTCCACTATCAAGAAATTCAAAGATGCGATGGCCAAGCATTGTACGGATCGGTGCAGCATT GGTCCGGCCAAGGGTTTGAAGGTATCGGAGATTCTGAGATTGGTGGACAGCGGCCTAATTCCGAGGAAGAATTCCCCGGCGGTGGACGAGGAGGATGTAG GAGAGGGAAGTGGTGGATTGATAAGCCAGGTTGGCAGAGGGAAAGAATCATTAATACCTCCTATGTTATTGTAG
AA sequence Show only first row Show all	>Lus10015711 pacid=23167636 polypeptide=Lus10015711 locus=Lus10015711.g ID=Lus10015711.BGIv1.0 annot-version=v1.0 MESMACCPSFNTHLNVCPLNNNKRSIRYGFRPDSTGSNNPLLLSDRIGFRDRRSCRNRVSSSVRAQASICVSRSRRWWEDKAAVKPNMVEIQSAQQLVDT LQCAGDRLVIIDFYSPGCGGCRTLHPKICQIAESNPNAMFLKVNFEEMKTMCECLNIRVLPFFRFYRGSDGRLCSLSCTNSTIKKFKDAMAKHCTDRCSI GPAKGLKVSEILRLVDSGLIPRKNSPAVDEEDVGEGSGGLISQVGRGKESLIPPMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10015711 [exp]	0	1
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	4.4	0.9215
AT5G38650			Proteasome maturation factor U...		Lus10005377 [exp]	4.9	0.9026
AT5G66440			unknown protein		Lus10041775 [exp]	5.3	0.9203
					Lus10031884 [exp]	6.0	0.9185
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	6.7	0.8790
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10042318 [exp]	7.1	0.9078
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	8.3	0.9187
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10006348 [exp]	10.0	0.8465
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10042162 [exp]	12.0	0.8841
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10006059 [exp]	13.0	0.8815

Compare expression of checked genes

Lus10015711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.