Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26550 219 / 1e-74 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G18040 62 / 5e-13 PIN1AT "peptidylprolyl cis/trans isomerase, NIMA-interacting 1", peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (.1) AT5G19370 47 / 1e-06 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019084 [exp] 229 / 3e-78 AT1G26550 225 / 4e-77 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10014266 [exp] 61 / 2e-12 AT2G18040 199 / 9e-68 "peptidylprolyl cis/trans isomerase, NIMA-interacting 1", peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (.1) Lus10025967 [exp] 61 / 6e-12 AT2G18040 200 / 8e-67 "peptidylprolyl cis/trans isomerase, NIMA-interacting 1", peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (.1) Lus10000413 [exp] 51 / 7e-08 AT5G19370 240 / 1e-77 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1) Lus10026105 [exp] 51 / 7e-08 AT5G19370 233 / 8e-76 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G089900 [exp] 212 / 1e-71 AT1G26550 214 / 1e-72 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.007G013400 [exp] 66 / 3e-14 AT2G18040 198 / 4e-67 "peptidylprolyl cis/trans isomerase, NIMA-interacting 1", peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (.1) Potri.009G069300 [exp] 50 / 1e-07 AT5G19370 281 / 3e-94 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00639 [flax] [poplar] Rotamase PPIC-type PPIASE domain
Representative CDS sequence Show only first row Show all	>Lus10015714 pacid=23167728 polypeptide=Lus10015714 locus=Lus10015714.g ID=Lus10015714.BGIv1.0 annot-version=v1.0 ATGATGGTTAAACTCGTCAATCATCATGAATATGATTATCTGCATTTCTCTATCGGCTTCCAAGCAATGGGGAAGAAAGATGGGGCAAAAGGCAAAGGTA AGGCAGCTAGTAGCAGTGATGAAAATGCTTCAAAGGGTAAGGGAAAAGCTGGAAAGGCTGATGGACTTGGCACATGCACATATGTAAAAGCAAGGCATAT TTTGTGCGAGAAGCAAGGTAAGATTAATGAGGCATACAAGAAACTGCAAGACGGTTGGCTAAGCAATGGAGATAAAGTCCCCCCCGCTGAGTTTGCGAAG GTAGCGACGGAGTATTCAGAGTGCCCTTCGGGAAAGAAGGGTGGAGACCTTGGATGGTTTCCGCGTGGGAAGATGGCCGGTCCGTTCCAAGAGGTTGCTT TCAACACCCCAGTTGGAGCTACTAGTGCACCGTTTAAGTCAACACATGGGTATCACATAATCCTATCTGAAGGCCGAAAGAATTGA
AA sequence Show only first row Show all	>Lus10015714 pacid=23167728 polypeptide=Lus10015714 locus=Lus10015714.g ID=Lus10015714.BGIv1.0 annot-version=v1.0 MMVKLVNHHEYDYLHFSIGFQAMGKKDGAKGKGKAASSSDENASKGKGKAGKADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAK VATEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGATSAPFKSTHGYHIILSEGRKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10015714 [exp]	0	1
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10017846 [exp]	1.4	0.8666
AT1G67350			unknown protein		Lus10015785 [exp]	1.4	0.8601
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Lus10014846 [exp]	2.4	0.8284
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001696 [exp]	3.0	0.8521
AT3G02120			hydroxyproline-rich glycoprote...		Lus10032981 [exp]	3.6	0.7931
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10019622 [exp]	4.2	0.8169
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10015542 [exp]	5.9	0.8344
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10026986 [exp]	6.9	0.8175
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10023188 [exp]	7.2	0.8374
AT5G42850			Thioredoxin superfamily protei...		Lus10037477 [exp]	7.5	0.8188

Compare expression of checked genes

Lus10015714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.