Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61410 451 / 5e-162 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) AT3G01850 155 / 3e-46 Aldolase-type TIM barrel family protein (.1.2) AT1G63290 147 / 5e-43 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001653 [exp] 469 / 6e-169 AT5G61410 476 / 6e-172 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10021627 [exp] 450 / 4e-161 AT5G61410 452 / 2e-162 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10019083 [exp] 278 / 8e-94 AT5G61410 265 / 3e-89 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10019082 [exp] 140 / 3e-42 AT5G61410 136 / 4e-41 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10035219 [exp] 142 / 3e-39 AT3G01850 372 / 6e-130 Aldolase-type TIM barrel family protein (.1.2) Lus10032052 [exp] 138 / 4e-39 AT1G63290 362 / 4e-128 Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062100 [exp] 452 / 3e-162 AT5G61410 494 / 4e-179 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Potri.001G332700 [exp] 157 / 6e-47 AT3G01850 387 / 2e-138 Aldolase-type TIM barrel family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00834 [flax] [poplar] Ribul_P_3_epim Ribulose-phosphate 3 epimerase family
Representative CDS sequence Show only first row Show all	>Lus10015715 pacid=23167651 polypeptide=Lus10015715 locus=Lus10015715.g ID=Lus10015715.BGIv1.0 annot-version=v1.0 ATGGCGACTTCTGCTTCTTTATGTTGTTCGGCTCGGATCAATGGAGTCCAAAGGAGGAGCCTTTTTCAGCCAACTTCATTTCCTCGCCACCACGGGAGAA GAGTGGATTTCGTAGTGAAGGCAATGTCTCGCGTAGATAAATTCTCGAAAAGCGACATCATCGTTTCGCCATCCATCCTGTCAGCTAATTTCGCAAAGTT GGGAGAGCAGGTAAAAGCAGTAGAGATGGCAGGATGTGATTGGATTCATATCGATGTGATGGATGGCCGGTTTGTGCCAAACATCACGATCGGACCTCTT GTGGTCGATGCCCTTCGCCCTGTGACAGACCTTCCCTTGGATGTCCATTTGATGATTGTGGAACCTGACCAACGTGTGCCGGAATTTATCAAGGCCGGAG CTGACATAGTCAGTGTCCACTGTGAACAATCTTCCACTATTCATCTGCATCGTACTGTCAACCAGATAAAAAGTCTTGGAGCCAAAGCTGGGGTCGTGTT GAACCCTGCCACCCCTTTGAACGCCATCGATTATATTCTTGATGTGGTTGATCTGGTCTTGATCATGTCGGTGAACCCGGGTTTCGGCGGGCAGAGCTTC ATAGAGAGCCAAGTAAACAAGATTGCTGATTTACGAAGATTGTGTGTAGAAAAGGGAGTAAACCCGTGGATAGAGGTCGATGGTGGTGTTGGTCCCAAGA ATGCCTACAAGGTTATCGACGCTGGAGCGAATGCCTTAGTTGCTGGATCTGCTGTATTCGGAGCCAAAGATTACGCTGAAGAGGCTGCAGCACTTATACC TGCACTACTTCATGCACAATTGGAACGTTTGACAGCTATAAAAGGAATTAAAACCAGCACAAGGCCAGCATCAGTACCAGCATGA
AA sequence Show only first row Show all	>Lus10015715 pacid=23167651 polypeptide=Lus10015715 locus=Lus10015715.g ID=Lus10015715.BGIv1.0 annot-version=v1.0 MATSASLCCSARINGVQRRSLFQPTSFPRHHGRRVDFVVKAMSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVEMAGCDWIHIDVMDGRFVPNITIGPL VVDALRPVTDLPLDVHLMIVEPDQRVPEFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLNAIDYILDVVDLVLIMSVNPGFGGQSF IESQVNKIADLRRLCVEKGVNPWIEVDGGVGPKNAYKVIDAGANALVAGSAVFGAKDYAEEAAALIPALLHAQLERLTAIKGIKTSTRPASVPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10015715 [exp]	0	1
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10027616 [exp]	11.3	0.8822
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10001453 [exp]	14.7	0.8745
AT3G47070			unknown protein		Lus10001204 [exp]	19.6	0.8697
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10029559 [exp]	31.2	0.8691
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10001645 [exp]	31.5	0.8620
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	32.0	0.8617
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10014135 [exp]	33.3	0.8669
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10002180 [exp]	33.5	0.8611
AT3G05410			Photosystem II reaction center...		Lus10029903 [exp]	38.7	0.8582
AT2G30570		PSBW	photosystem II reaction center...		Lus10024858 [exp]	47.5	0.8557

Compare expression of checked genes

Lus10015715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.