Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61400 407 / 2e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16640 234 / 6e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 227 / 3e-67 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 224 / 3e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 224 / 6e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 223 / 7e-66 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 221 / 1e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 219 / 2e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 218 / 7e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 216 / 3e-64 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019081 [exp] 796 / 0 AT5G61400 406 / 7e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 232 / 6e-69 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 223 / 2e-65 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018019 [exp] 219 / 4e-65 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027914 [exp] 221 / 5e-65 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 222 / 2e-64 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042016 [exp] 216 / 2e-64 AT2G32630 600 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013283 [exp] 216 / 6e-64 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10042529 [exp] 218 / 1e-62 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045000 [exp] 236 / 7e-72 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G014500 [exp] 238 / 4e-71 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G147700 [exp] 233 / 3e-70 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 233 / 3e-70 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 234 / 5e-70 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 231 / 1e-69 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 230 / 1e-69 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 224 / 6e-69 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 234 / 1e-68 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 227 / 1e-68 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015716 pacid=23167712 polypeptide=Lus10015716 locus=Lus10015716.g ID=Lus10015716.BGIv1.0 annot-version=v1.0 ATGACGGAAGCTGAGTTTTGGTTCAGACATATGCAGGAAATGGGGATATTTCCCAATTTTCATACTTACAATATTATGATGGATGGCCACTGTAAAATGG CAAATGTTAAGCGAGCCCTTGTTTTGTATCATGAATTGCTTGAGCGGCGTCTCCAGATTAATGCTATTACTTTCGGAACTTTGGTAGATGGGTTTTGCAA AGCTGGTGCCATGTTAGCTGCGAGGAGCTTGTTTGCCCACATGGAAAAGCTTGGTGTTCCCCCCAACACAGCTGTGTATAATTGCTTGATTGATGGGCTC TCTAAGGCAGGAAACCTCTCCAAAGCTATTGATTTACATCTGGAGATGCAAAAGCTGGAAATTGCACCTGATGTCCTAACGTGCAGTATACTTGTGGAAG GTCTTTGCTGCATTGGCAGGGTAGAAGCAGCAGAAGGCTTACTGGAAATAATGAGCAGAGAAGGGGTCGTTCCAAACTCCGTGACCTATAATTCGTTAAT TAAAGGGTACTGCAAAGAAGGTAACATGGCAAAGGCTCTGAAACGAACTTCTGAAATGACAGAAAAGAGTGTAGAACCAAATGCCATCACTTTCTCTACA TTGATTGATGGATATTGCAAGGAGGACAATTTGCAGGCTGCCTCGGCTCTCTTCTCTGAAATGGTAATTAAAAATATCGTCCCTGATGTGGTTGTATTTA CGGCTTTGATTGATGGCCATTGTAAAAATGGGAATATGACAGAGGCCCTTCACATCTTTAACCAGATGTTGGAGGCACAAATCACTCCCAATGTTCTTAC CATCACTTGTTTGATTGATGGTCTTTGCAAACGTGGGAAGTTGCATGGTGCGGTTAAACTTTTCTTGGAGAGGACTAAGAGTTGCACGGATGGATTATGT TATCCAAATCATGTCATGTATACATCGTTGATTCAAGGGCTGTGCAAGAATGGACAAATTTTCAAAGCCAGCAAGTTCTTCTCAGATATGAGACGGGATG GTGTGAGACCTGACGAACTGACTTACAAGATCATGCTCCAAGGGCACTTAGTGGTCAAGCATATGTTCGATGTCATGATGTTGTATTGCGACACAATAAA GATGGGTGTCCTTGGGAGTGGGATGATATACCAGATCCTAGCAGAAGGCTATCAAGCCAACGGATATCATAAGTCAGCTCTATGGTGCTCCAAAGATTTT GAGTGA
AA sequence Show only first row Show all	>Lus10015716 pacid=23167712 polypeptide=Lus10015716 locus=Lus10015716.g ID=Lus10015716.BGIv1.0 annot-version=v1.0 MTEAEFWFRHMQEMGIFPNFHTYNIMMDGHCKMANVKRALVLYHELLERRLQINAITFGTLVDGFCKAGAMLAARSLFAHMEKLGVPPNTAVYNCLIDGL SKAGNLSKAIDLHLEMQKLEIAPDVLTCSILVEGLCCIGRVEAAEGLLEIMSREGVVPNSVTYNSLIKGYCKEGNMAKALKRTSEMTEKSVEPNAITFST LIDGYCKEDNLQAASALFSEMVIKNIVPDVVVFTALIDGHCKNGNMTEALHIFNQMLEAQITPNVLTITCLIDGLCKRGKLHGAVKLFLERTKSCTDGLC YPNHVMYTSLIQGLCKNGQIFKASKFFSDMRRDGVRPDELTYKIMLQGHLVVKHMFDVMMLYCDTIKMGVLGSGMIYQILAEGYQANGYHKSALWCSKDF E

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10015716 [exp]	0	1
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10016736 [exp]	6.0	0.7742
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10003841 [exp]	6.6	0.8064
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007673 [exp]	7.9	0.8040
AT4G16580			Protein phosphatase 2C family ...		Lus10016309 [exp]	14.4	0.7981
AT5G17070			unknown protein		Lus10008757 [exp]	22.4	0.7689
AT3G30841			Cofactor-independent phosphogl...		Lus10003060 [exp]	26.1	0.7338
					Lus10043073 [exp]	28.4	0.7552
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10030467 [exp]	34.5	0.7021
AT4G29490			Metallopeptidase M24 family pr...		Lus10032694 [exp]	35.8	0.7561
AT5G17460			unknown protein		Lus10009117 [exp]	36.1	0.7550

Compare expression of checked genes

Lus10015716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.