Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61400 152 / 3e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G38730 82 / 1e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 74 / 6e-15 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 72 / 2e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 70 / 1e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 68 / 6e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 67 / 1e-12 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12700 67 / 1e-12 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT3G22470 67 / 2e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 66 / 2e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019080 [exp] 394 / 1e-140 AT5G61400 159 / 8e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032174 [exp] 79 / 2e-16 AT5G38730 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008185 [exp] 78 / 3e-16 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027974 [exp] 77 / 4e-16 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013077 [exp] 76 / 2e-15 AT5G40400 587 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026465 [exp] 75 / 4e-15 AT1G05670 197 / 6e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10039056 [exp] 70 / 2e-13 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034421 [exp] 70 / 2e-13 AT2G02150 706 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014513 [exp] 66 / 2e-12 AT5G38730 446 / 7e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015900 [exp] 71 / 7e-14 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 71 / 9e-14 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G071600 [exp] 69 / 2e-13 AT5G40400 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 69 / 2e-13 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G068400 [exp] 69 / 2e-13 AT3G22470 300 / 8e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G108600 [exp] 69 / 4e-13 AT5G38730 762 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 68 / 8e-13 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G147700 [exp] 67 / 9e-13 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 67 / 1e-12 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G066600 [exp] 67 / 1e-12 AT2G26790 521 / 4e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015717 pacid=23167729 polypeptide=Lus10015717 locus=Lus10015717.g ID=Lus10015717.BGIv1.0 annot-version=v1.0 ATGTATAAGTCGCTTATTCCAAAATGCTTTATCGTCAACGCTCCCCTTAACCCTCGTCTCTCCCTTTTCCTATTTTCTTCTTCTTACTCTTCCCCCACCT CTTTGCTGCCTTCTGATCTCACAGCCGCCATTCTCTACTCAAGAACCGCTGACCAAGCCCTCCAACTCTTCACTTCCATCGTAAATCGCAACTCCAAATC CCCAGTGAAAAACCTTCCACATTACTCCGCCGTGATTCACGTGTTAACAGGTGCTGGTGCGTACACTCCCGCCAGGTGCTTGATAAAAGGCCTGATCCAG TCCTTCCTGAAATCCCACGACCCAAAACGTGCCAGCTCGTTGATTTTCGACGCTCTCAGTCGATTGGAGAGCTCCAAATTCACTTCCGATGTGTTTGGGA CGTTGATTATTGCACTCTGCGAGGCGGGACTTGTTGACGAAGCCCTGCGGGTGCGCCGCAAGATTGGTGTTTTACCTGCGAGGCAAGCTTGCAATGCCCT TATGAACGGGCTAGTTAAGAAAGGGGGATTCGACTCCATGTGGGCAATTTATGAAGAAATGGTTTCCGATGGGTTGGTGCCTAGTGTTGTCAGTTATGGC GTACTGATCAATGCTTGTTGCTGCCAAGGTGATCTAATAAAGGCGGCGTCTTTGATTAGCGAGATTATGGAGAAAGGGATTCAGCCCCACCGTTGTGATC TACACAACTCTCATTCGTGGGTTTTGCTGTGA
AA sequence Show only first row Show all	>Lus10015717 pacid=23167729 polypeptide=Lus10015717 locus=Lus10015717.g ID=Lus10015717.BGIv1.0 annot-version=v1.0 MYKSLIPKCFIVNAPLNPRLSLFLFSSSYSSPTSLLPSDLTAAILYSRTADQALQLFTSIVNRNSKSPVKNLPHYSAVIHVLTGAGAYTPARCLIKGLIQ SFLKSHDPKRASSLIFDALSRLESSKFTSDVFGTLIIALCEAGLVDEALRVRRKIGVLPARQACNALMNGLVKKGGFDSMWAIYEEMVSDGLVPSVVSYG VLINACCCQGDLIKAASLISEIMEKGIQPHRCDLHNSHSWVLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10015717 [exp]	0	1
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	3.3	0.8841
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	8.8	0.8435
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	12.5	0.8381
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	13.1	0.8454
AT5G04610			S-adenosyl-L-methionine-depend...		Lus10003963 [exp]	15.3	0.8079
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	19.4	0.8389
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	20.3	0.8398
AT1G04390			BTB/POZ domain-containing prot...		Lus10027380 [exp]	22.2	0.8206
AT5G19420			Regulator of chromosome conden...		Lus10009701 [exp]	24.7	0.8077
AT5G22450			unknown protein		Lus10004878 [exp]	24.7	0.8317

Compare expression of checked genes

Lus10015717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.