Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 358 / 2e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 347 / 2e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05750 337 / 7e-110 PDE247, CLB19 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 335 / 1e-108 MEF21 mitochondrial editing factor 21 (.1) AT5G44230 337 / 1e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 333 / 5e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 330 / 7e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G48910 331 / 1e-105 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 329 / 1e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 332 / 5e-105 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019079 [exp] 426 / 4e-146 AT5G19020 206 / 2e-60 mitochondrial editing factor 18 (.1) Lus10030053 [exp] 374 / 2e-121 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 367 / 7e-120 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 366 / 2e-119 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 351 / 3e-113 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 350 / 7e-113 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 347 / 6e-112 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 340 / 8e-111 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026006 [exp] 343 / 1e-110 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G003600 [exp] 669 / 0 AT5G66520 354 / 1e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 378 / 5e-124 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 374 / 9e-124 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 357 / 2e-116 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G119000 [exp] 358 / 5e-116 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G217900 [exp] 353 / 5e-114 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.005G202600 [exp] 344 / 4e-112 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G031600 [exp] 349 / 1e-111 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G086100 [exp] 340 / 2e-110 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G073100 [exp] 339 / 4e-110 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015718 pacid=23167681 polypeptide=Lus10015718 locus=Lus10015718.g ID=Lus10015718.BGIv1.0 annot-version=v1.0 ATGATTGTTGAGCAACAGTTGATCCCCAAAACCCCCACCAGCTCCAGAGCTCTACAACAGCACCTCTTCTCCCTTCTACGTCGCCGCGAGTGTCTCCCTC AAATCCATACTCAGATCGTCATCAACGCTTACTCCACCAAAAACTTCCTCCTCGCCAAGCTCCTCTCCTCCTACTTAGATTCCGGCCATCTCCTTCCCGC CCTCCGCATTTTCCAAGATTTGGAGTCCCCAAGTACCACCGTATGGAATCAGATCATCAGGGGTCATGCTCGTGGCGAAACGCCGCACAAGTCCCTCCAA CTCTTCAACCAAATGATCGGCACGGGAGTGGAGCCAGATGGCTTTACTTATAATTTTGCTCTGAGCGGCTGCGCCAGGTTAGGGTCCTCGAGAGAAGGGG AACAGCTTCACGGGAGAGCTTTCTCAACTGGGCATTACTCGAACGTGTTTGTGAACACCAGTTTGCTCAATATGTACGCGAATGTAGAATGCAAATCCGG AATGGAGTGTGCACGCAAGGTGTTCGATGAAATGGGTGAAAGAAAAAATGTCGCCACTTGGAACACTTTACTTGTGGGACATTTGCGGTGTGGGGATTTG GAATTAGCTAGGGATTTGTTCGATGAAATGCCTGAGAAGAATGTAGTTTCCTGGACAGCTATGATCGCAGGGCACGCCAGATGTGGCAAGTGTAAGCATG CGTTGATTTTGTTCGATCAGATGAGGAAATCTGAAGTCGAACTGGACCAGGTGGCTTTAGTGGCAGCGTTGTCAGCTTGTGGTGAAATTGGGGATTTGCA GCTAGGTAAGTGGATTCACTCTTATGTTACTGAATCCTTCAGCAGTAAGAACAAGCATGTATTAGTGTCTTTGAACAATGCGCTTATCCATATGTACGGT AGTTGCGGAATGATCGAGGAAGCTTATGAAGTATTTAGGTCGATGCCGGAGAGGACTTCTGTTTCTTGGACTAGCTTGATTGTTGCATTTTCCAAACAAG GGTACGCAGAACAGGCACTATCTGTGTTTAATCATATGCAAACTTCGGGAGCCAAAGAAGCAAAGCCCGACGAAATAACCTTCATCGGAGTTCTTTCTGC TTGTAGCCACGGTGGATATGTCAACGAAGGCCGCAAAATTTTCAACGACATGATCTGCAGCTGGGGTGTTAGCCCTAGAATTGAGCATTACGGTTGTGTT GTTGATTTATACAGTCGTGCTGGCCTTCTCGACGAAGCAAGCGACCTTATTAAGACGATGCCAATGAAACCAAATGATGCAGTATGGGGTGCTTTGCTCG GTGGTTGCAGGATTCACAAGAGTGCTGAACTTGCCTCTCTGGTAGCTCGATCGATGCTGTCTGAGGAGCTGGACCCTGACCAGGCTGCTGGGTATCTAGT GCTGTTGGCTCATGTGTTTGCAAGTGATAAAAGGTGGCGAGACATGGCTACCATGAGGCGAAAGATGGTAGAGATTGGGGCCAGAAAGCCTGCTGGCCGG AGTTGGGTTGAAGTGAACGGTTCGGTTCATGAGTTCATTGCCGGTGACTGGACTCACGAGAACACGTCTTCCATATACGATGTTATCGGCAGCATCGCCG ACCAGGCTAAGCCGGAGGAGGAACATCAACACAAGTCCAACGTTTTGATGGTCTTGCCGAATGCATAA
AA sequence Show only first row Show all	>Lus10015718 pacid=23167681 polypeptide=Lus10015718 locus=Lus10015718.g ID=Lus10015718.BGIv1.0 annot-version=v1.0 MIVEQQLIPKTPTSSRALQQHLFSLLRRRECLPQIHTQIVINAYSTKNFLLAKLLSSYLDSGHLLPALRIFQDLESPSTTVWNQIIRGHARGETPHKSLQ LFNQMIGTGVEPDGFTYNFALSGCARLGSSREGEQLHGRAFSTGHYSNVFVNTSLLNMYANVECKSGMECARKVFDEMGERKNVATWNTLLVGHLRCGDL ELARDLFDEMPEKNVVSWTAMIAGHARCGKCKHALILFDQMRKSEVELDQVALVAALSACGEIGDLQLGKWIHSYVTESFSSKNKHVLVSLNNALIHMYG SCGMIEEAYEVFRSMPERTSVSWTSLIVAFSKQGYAEQALSVFNHMQTSGAKEAKPDEITFIGVLSACSHGGYVNEGRKIFNDMICSWGVSPRIEHYGCV VDLYSRAGLLDEASDLIKTMPMKPNDAVWGALLGGCRIHKSAELASLVARSMLSEELDPDQAAGYLVLLAHVFASDKRWRDMATMRRKMVEIGARKPAGR SWVEVNGSVHEFIAGDWTHENTSSIYDVIGSIADQAKPEEEHQHKSNVLMVLPNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10015718 [exp]	0	1
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10032787 [exp]	1.4	0.8474
AT1G64450			Glycine-rich protein family (....		Lus10001818 [exp]	2.8	0.8175
AT2G34510			Protein of unknown function, D...		Lus10023314 [exp]	5.5	0.8245
					Lus10000961 [exp]	5.5	0.7834
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	5.7	0.8271
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008869 [exp]	5.9	0.7556
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	6.3	0.8298
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10042736 [exp]	9.2	0.8252
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	13.0	0.8263
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	13.8	0.8054

Compare expression of checked genes

Lus10015718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.