Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61390 541 / 0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G07710 512 / 1e-179 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G74390 482 / 4e-167 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT4G39810 276 / 2e-90 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019078 [exp] 971 / 0 AT5G61390 528 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000567 [exp] 727 / 0 AT5G61390 480 / 8e-167 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022503 [exp] 265 / 2e-85 AT4G39810 305 / 2e-104 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10016807 [exp] 264 / 5e-85 AT4G39810 297 / 2e-101 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062000 [exp] 647 / 0 AT5G61390 543 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G088500 [exp] 285 / 4e-94 AT4G39810 311 / 3e-108 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.005G079100 [exp] 283 / 2e-92 AT4G39810 344 / 3e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10015719 pacid=23167725 polypeptide=Lus10015719 locus=Lus10015719.g ID=Lus10015719.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTACCTCCACCGCCAAAATCACCGGCGACCCGTCGGAGATTGCTTTCTTCGACGTGGAAACCACCGTCCCTACCCGACCTGGCCAGGGAT ACGCTCTTCTGGAGTTCGGAGCGATTTTGGTGTGTCCCAAAACTCTCGAGGAGCTCCAAAGCTACTCCACACTCATCCGCCCGTCAAATCCGTCGCTTAT CACTTCCTTGTCTGTCCGTTGCAACGGCATCACTCGCGACGCCGTCACCACTGCTCCTTGCTTCTCCGACATCGCCGATACCGTCTACGGCATCCTCCAT GGGAGGATTTGGGCGGGACATAACATTTTGAGGTTCGATTGCCCTAGAATTAGAGAAGCTTTTGCTCATATTGGAAGGCCAGCTCCCGAGCCTAAGGGGA CTATTGATTCCTTGGCCTTGTTGACTCAGAGGTTTGGAAGGAGAGCTGGTAACATGAAGATGGCTACTCTGGCTACATACTTTGGGCTTGGGAAGCAGAC TCATAGGAGCTTGGATGATGTTCGGATGAACCTTGAAGTTGTGAAATACTGTGCCACTGTTTTATTCTTGGAATCGAGTCTTCCAGAGACATTTCCAGAA AAAAGCTGGGTTTCACCTGATGTTACTACCAGAAGCCGCAAGATGGGAAAATCGGTTATTGATGCAACGGATTCGCATGAGAATACTCCTTCAAGTTCGA AGTCAGCTGAGCACTCGACAGAGAGAAACCATCCAATATTATCTCTTGTGACCAGTAGCGTTGTTGAAAATACAGACCCTTTCGACATGAGTGTGCTCAG AGATGAGGTGAATACCGAGTCCTTGGAAAAGGATGTTCCTATGGAAGAAAATCCCGTCGTAGAAACTGCTGAAATGCCACCGGCAGCTTCTGTTCCAGCG TCAAACAGTAACAATGTAGAAATTGTACAGCTTGACAAAGTCTCTGTTCCTTCGATCAGGGCAGTTTATGTTCCGTATCCCCGCGGAGGTCAAAAGATCT CGTTATTCCACAAGGATGCCCAATTCGAGCTGTATTGTCCTTGTTTAAAAGTGCGGTTCGGACTCAGCACAAAGTTCCTCGACTATGCTGGAAGGCCGCG ACTGAGTTTCATGGTTGATCTCTCTCCGAATTTGTGTAGTGTTCTTGATGCCTGTGATGAGCTTGCCATGAACTTATTCCAAAGTTCAGGCAGTGAATCT AATTGGAGGCGTGTTGTAGTACGACATGATAGATACACCAATTACCCTAAAGCAAGGCTCAACATACCCACTTTGGTAGACGGGAATGTTGCTCAATATG CGACGGACATGTATCAGAAAGAACGATCAGGAACCATGCAAAAGATTGTATTCTGCAAGTTTGATCCAGAGGAGCTGGAGCCATGGCTTAACCCCGGAAC ATTGCTGGATGCATACCTCTCCCTAGATACCTACGATTATCAAAACAGCGCTGGAATTCGACTTGTGGCAAAGAAACTGGTGATCCATAATGAATGA
AA sequence Show only first row Show all	>Lus10015719 pacid=23167725 polypeptide=Lus10015719 locus=Lus10015719.g ID=Lus10015719.BGIv1.0 annot-version=v1.0 MAASTSTAKITGDPSEIAFFDVETTVPTRPGQGYALLEFGAILVCPKTLEELQSYSTLIRPSNPSLITSLSVRCNGITRDAVTTAPCFSDIADTVYGILH GRIWAGHNILRFDCPRIREAFAHIGRPAPEPKGTIDSLALLTQRFGRRAGNMKMATLATYFGLGKQTHRSLDDVRMNLEVVKYCATVLFLESSLPETFPE KSWVSPDVTTRSRKMGKSVIDATDSHENTPSSSKSAEHSTERNHPILSLVTSSVVENTDPFDMSVLRDEVNTESLEKDVPMEENPVVETAEMPPAASVPA SNSNNVEIVQLDKVSVPSIRAVYVPYPRGGQKISLFHKDAQFELYCPCLKVRFGLSTKFLDYAGRPRLSFMVDLSPNLCSVLDACDELAMNLFQSSGSES NWRRVVVRHDRYTNYPKARLNIPTLVDGNVAQYATDMYQKERSGTMQKIVFCKFDPEELEPWLNPGTLLDAYLSLDTYDYQNSAGIRLVAKKLVIHNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61390			Polynucleotidyl transferase, r...		Lus10015719 [exp]	0	1
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	7.1	0.7556
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	9.8	0.7446
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10041978 [exp]	10.6	0.7139
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	12.6	0.7409
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10021565 [exp]	13.9	0.7326
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10024512 [exp]	20.9	0.7309
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	23.7	0.6975
AT1G77480			Eukaryotic aspartyl protease f...		Lus10025687 [exp]	28.5	0.7273
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10039295 [exp]	28.8	0.7089
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	36.9	0.7108

Compare expression of checked genes

Lus10015719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.