Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61380 438 / 8e-148 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT5G60100 127 / 2e-31 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G24470 125 / 5e-30 APRR5 pseudo-response regulator 5 (.1) AT2G46790 121 / 2e-29 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G02810 117 / 2e-27 APRR7, PRR7 pseudo-response regulator 7 (.1) AT4G16110 89 / 2e-18 GARP ARR2 response regulator 2 (.1) AT4G31920 87 / 6e-18 GARP ARR10 response regulator 10 (.1) AT1G67710 87 / 7e-18 GARP ARR11 response regulator 11 (.1) AT2G25180 87 / 1e-17 GARP ARR12 response regulator 12 (.1) AT3G16857 86 / 2e-17 GARP ARR1 response regulator 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019077 [exp] 1005 / 0 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10000566 [exp] 708 / 0 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10021629 [exp] 683 / 0 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015571 [exp] 131 / 4e-32 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10023229 [exp] 129 / 5e-32 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1) Lus10008879 [exp] 130 / 7e-32 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1) Lus10032934 [exp] 125 / 2e-30 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1) Lus10023230 [exp] 114 / 2e-26 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10014018 [exp] 114 / 2e-26 AT5G02810 452 / 6e-148 pseudo-response regulator 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061900 [exp] 591 / 0 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.012G005900 [exp] 131 / 3e-32 AT5G24470 305 / 9e-94 pseudo-response regulator 5 (.1) Potri.015G002300 [exp] 128 / 4e-31 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.010G215200 [exp] 121 / 1e-28 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1) Potri.014G106000 [exp] 120 / 1e-28 AT5G24470 271 / 3e-81 pseudo-response regulator 5 (.1) Potri.008G046200 [exp] 120 / 2e-28 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.002G179800 [exp] 119 / 2e-28 AT5G24470 269 / 2e-80 pseudo-response regulator 5 (.1) Potri.008G213500 [exp] 87 / 1e-17 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G181000 [exp] 86 / 1e-17 AT1G67710 383 / 5e-127 response regulator 11 (.1) Potri.010G053100 [exp] 86 / 1e-17 AT1G67710 380 / 2e-126 response regulator 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10015720 pacid=23167616 polypeptide=Lus10015720 locus=Lus10015720.g ID=Lus10015720.BGIv1.0 annot-version=v1.0 ATGGAACCGGGGAAGGATAAGATTGCCAACGTTGATTGTGCTGCTGGTACAAGTGCGAGTGGAGGAGATGGTTTTTTTGACAGAAGTAAAGTGAGGATTC TACTGTGTGATAATGATTCCTCCAGCTCTGAGGAGGTTTACACTCTTCTTTTGAAGTGTTCTTATCAGGTTACATCAGTTAAGTCTGCTAGGCAGGTGAT TGATGCCCTAAATACCGAGGGGCCGGATATTGATATCATACTCGCTGAAGTTGATCTTCCAATGAAGAAGGGCATGAGGATGCTGAAGTACATAACTCGG CATAAGGATTTGCGACGCATTCCTGTCATCATGATGTCGGAACATGATGTGGTTACAACTGTTGTAAAGTGCTTGAGATTTGGAGCTGCTGATTATCTTG TGAAGCCATTACGTACCAATGAGTTGTTAACCCTGTGGACTCACATGTGGCGCAGAAGAAGGATGCTTGGATTAGCTGAGAAGAACATCTTAAACTATGA GTTGGACCCGGTGGCATCAGACCCCAGTGATGCTAATACAAGCAGTACCACTTTATTTTCAGACGACACAGATGACAAGTCAAGGAAGAGTAACCATCCA GACACCGTGACATCTATACCTCTGGATAATGAACCTGTGGTAGCTCCTGGTGATGTTGCTGTCATTGAACCTTGGCATGAAACTTCACGGAATAATCGTC CCGATGTCCCCGGAATCACTGACCGTCGTCAGAAAGTTGCTGAGCCCTTCTCAGGTGGCCCAAATAAAAGTGAACTAAAGATTGGGGAATCTTCTGCCTT CTTTACTTATGTCAAATCCAGCCCAGTGAAAGGAGTTGCTCATAAGCAGAAGGAGTTGAGGATGGAAAAGGAAATGCAAGACTCTGGTCAGCAAGCAGTT ACAGATGCTCAAGTACAGGAGAATGGGGAGGCTTGGGAAAATTATTCTCAAGGAGATGAATTCCGTAGCTGTGCCAGCATCAGCATCCCTGATTCTCTTT CTCTTGGAAGATCTTCCACTCCTCCTGGTTCAGGAGAATATTCTGAATTCAACTTCAAGGAAGAGAATCTACCTCACAGGCCTAGGCAGCAAAGAAATGA AATGCAGCATCAAGCCTCTGATTTGCAACCTCAACATGGCTATTCCTATTACATGCATGGAGTTATGAATCAAGTTATGATGCAGTCATCGACACAGCTA TACCAGAATAATGTGCTTCCTCAACATAATCATTTTCCTCAGCATATCACCCATGTGCCTGGGATGCCGCAATTTCCCTATTACCCGGTTAACATGTGCT TACAACCCGGTCAAATGCTCGGTAACAATTCGTGGCAGCCATCATTCGTGTGTTCGACTGCTACTGAAGCAAAAACAAACAAAGTAGACAGAAGAGAGGC AGCATTGATCAAGTTTAGGCAGAAAAGGAAGGAGCGTTGCTTTGATAAGAAGATTAGGTATGTTAACAGGAAAAAGCTTGCTGAAAGGAGGCCTCGTGTC CGTGGACAATTTATTAGGAAGTCGAAAGGTGTAGATGTGGATCTTAATGGACATCCTACTGGCATTGATTACGAAGAAGACGATGAAGAGGATGACGATG AACTTGCATTACAGGATTGTTCTCCTGAAGATGAAACATCCTGA
AA sequence Show only first row Show all	>Lus10015720 pacid=23167616 polypeptide=Lus10015720 locus=Lus10015720.g ID=Lus10015720.BGIv1.0 annot-version=v1.0 MEPGKDKIANVDCAAGTSASGGDGFFDRSKVRILLCDNDSSSSEEVYTLLLKCSYQVTSVKSARQVIDALNTEGPDIDIILAEVDLPMKKGMRMLKYITR HKDLRRIPVIMMSEHDVVTTVVKCLRFGAADYLVKPLRTNELLTLWTHMWRRRRMLGLAEKNILNYELDPVASDPSDANTSSTTLFSDDTDDKSRKSNHP DTVTSIPLDNEPVVAPGDVAVIEPWHETSRNNRPDVPGITDRRQKVAEPFSGGPNKSELKIGESSAFFTYVKSSPVKGVAHKQKELRMEKEMQDSGQQAV TDAQVQENGEAWENYSQGDEFRSCASISIPDSLSLGRSSTPPGSGEYSEFNFKEENLPHRPRQQRNEMQHQASDLQPQHGYSYYMHGVMNQVMMQSSTQL YQNNVLPQHNHFPQHITHVPGMPQFPYYPVNMCLQPGQMLGNNSWQPSFVCSTATEAKTNKVDRREAALIKFRQKRKERCFDKKIRYVNRKKLAERRPRV RGQFIRKSKGVDVDLNGHPTGIDYEEDDEEDDDELALQDCSPEDETS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10015720 [exp]	0	1
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031247 [exp]	1.4	0.9405
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031818 [exp]	2.0	0.9201
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10041096 [exp]	2.4	0.9116
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10036419 [exp]	2.8	0.8996
AT3G46640	GARP	PCL1, LUX	PHYTOCLOCK 1, LUX ARRHYTHMO, H...		Lus10040780 [exp]	3.5	0.8607
					Lus10014061 [exp]	3.7	0.8476
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10019077 [exp]	4.5	0.8787
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10018201 [exp]	4.9	0.8403
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037559 [exp]	5.2	0.8343
					Lus10027443 [exp]	5.5	0.8321

Compare expression of checked genes

Lus10015720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.