Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07720 741 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G74380 729 / 0 XXT5 xyloglucan xylosyltransferase 5 (.1) AT1G18690 648 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT3G62720 533 / 0 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT4G02500 522 / 0 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT2G22900 305 / 8e-100 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G37690 304 / 8e-100 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G38310 100 / 3e-25 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019076 [exp] 865 / 0 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10021631 [exp] 803 / 0 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10000563 [exp] 796 / 0 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037519 [exp] 535 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037516 [exp] 534 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10002870 [exp] 530 / 0 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037514 [exp] 422 / 3e-146 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Lus10037520 [exp] 317 / 1e-107 AT4G02500 449 / 3e-159 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10011550 [exp] 323 / 6e-107 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061800 [exp] 764 / 0 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.012G068300 [exp] 740 / 0 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.008G208000 [exp] 537 / 0 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025300 [exp] 531 / 0 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 502 / 2e-177 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Potri.014G006100 [exp] 309 / 3e-101 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.007G005900 [exp] 303 / 4e-99 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF05637 [flax] [poplar] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Lus10015721 pacid=23167613 polypeptide=Lus10015721 locus=Lus10015721.g ID=Lus10015721.BGIv1.0 annot-version=v1.0 ATGATCCCTCGGGGGCGGCAGATCCACAAAACCTTCAACAACATTAAAATCACTATCATCTGCGGCTTCGTCACCATCCTCGTCCTCCGCGGCACAATCG GCTTTGGCAACCTCTCTAGCTCAGAAGCCGACGCGGTCAACCAAAACCTCATCGAGGAAACCAACCGCCTCCTAGCCGAGATCCGCTCCGACAAAGAACC AACCGATGGACCTCCCGCCTCCGACGACAGCTCCGAATTCCTCTCCACTAACGCCACCTACACACTCGGCCCCAAAATCTCCGATTGGGATAATCAGCGC AAGGTATGGCTCTCCCAAAACCCTGATTTCCCCAGCTCGGTCAATGGTAAACCTAGGATTCTTCTCCTCACCGGTTCCCCGCCAAACCCGTGCGACAACC CGATTGGGGATCACTATCTTCTAAAAGCCGCTAAGAACAAGATTGATTACTGTAGGATTCACGGGATTGAGATAGTTTACAACATGGCTCATTTGGATAA GGAGCTAGCTGGTTACTGGGCGAAATTGCCCATGATTAGGAGGCTGATGCTGTCTCATCCCGAAGTGGAGTGGCTTTGGTGGATGGATAGTGACGCTATG TTTACTGACATGGTGTTTGAGATCCCTCAGTCCAAGTACACTAACCACAACTTAGTCATCCATGGCTACCCGGATCTGCTCTTCGAGCAGAAATCCTGGA TTGCTTTGAACACTGGGAGTTTCTTGTTCAGGAACTGCCAGTGGAGTCTTGATCTGCTTGACGTCTGGGCTCCCATGGGCCCCAAGGGGCCGATTCGCGA GGAGGCTGGTAAAATCCTGACGGCTTACCTGAAAGGGAGGCCGGCATTTGAGGCCGACGATCAGTCAGCTTTGATCTATTTACTTCTCTCCCAGAAGGAG AAGTGGATGGACAAAGTGTATGTGGAGAATCAGTACTACTTGCACGGTTACTGGTTAGGGTTGGTGGATCGGTACGAAGAGATGATGGAGAAGTATCAAC CCGGTTTGGGTGACGAGAGGTGGCCTTTCGTCACTCATTTCGTGGGGTGTAAGCCTTGTGGGAGCTATGGGGATTATCCCGTTGAAAAGTGCTTGAAGAG TATGGAGAGGGCGTTCAATTTCGCCGATAATCAGGTGCTTAAGTTTTACGGGTTCGGGCATAGAGGGTTGTTGAGCGCCAAGATTAAGAGGATCGCGAAC GAAACTGCAACTCCGTTGGAGTATATGGACCGAGTTGATATTCGTCGTCCAGTCCCAAAGAGCTAG
AA sequence Show only first row Show all	>Lus10015721 pacid=23167613 polypeptide=Lus10015721 locus=Lus10015721.g ID=Lus10015721.BGIv1.0 annot-version=v1.0 MIPRGRQIHKTFNNIKITIICGFVTILVLRGTIGFGNLSSSEADAVNQNLIEETNRLLAEIRSDKEPTDGPPASDDSSEFLSTNATYTLGPKISDWDNQR KVWLSQNPDFPSSVNGKPRILLLTGSPPNPCDNPIGDHYLLKAAKNKIDYCRIHGIEIVYNMAHLDKELAGYWAKLPMIRRLMLSHPEVEWLWWMDSDAM FTDMVFEIPQSKYTNHNLVIHGYPDLLFEQKSWIALNTGSFLFRNCQWSLDLLDVWAPMGPKGPIREEAGKILTAYLKGRPAFEADDQSALIYLLLSQKE KWMDKVYVENQYYLHGYWLGLVDRYEEMMEKYQPGLGDERWPFVTHFVGCKPCGSYGDYPVEKCLKSMERAFNFADNQVLKFYGFGHRGLLSAKIKRIAN ETATPLEYMDRVDIRRPVPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07720			Galactosyl transferase GMA12/M...		Lus10015721 [exp]	0	1
AT5G07720			Galactosyl transferase GMA12/M...		Lus10019076 [exp]	2.0	0.9109
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	3.3	0.9305
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	6.9	0.9193
AT4G32800	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034949 [exp]	8.4	0.8849
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	8.5	0.9147
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035235 [exp]	8.7	0.8831
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	11.0	0.9040
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10007885 [exp]	12.4	0.8966
					Lus10031884 [exp]	14.5	0.8914
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	14.7	0.9086

Compare expression of checked genes

Lus10015721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.