Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18660 667 / 0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT1G75460 82 / 3e-17 ATP-dependent protease La (LON) domain protein (.1) AT1G19740 82 / 3e-17 ATP-dependent protease La (LON) domain protein (.1) AT3G27330 77 / 1e-14 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G24800 57 / 1e-08 PRT1 proteolysis 1 (.1) AT1G74990 52 / 5e-08 RING/U-box superfamily protein (.1) AT2G26350 54 / 8e-08 PEX10, ATPEX10 peroxin 10 (.1) AT2G42030 53 / 3e-07 RING/U-box superfamily protein (.1) AT4G12400 53 / 4e-07 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G12270 52 / 9e-07 Hop1 Hop1, stress-inducible protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019075 [exp] 862 / 0 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10022324 [exp] 80 / 7e-16 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10032119 [exp] 79 / 8e-16 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10024294 [exp] 64 / 1e-11 AT1G75460 313 / 2e-109 ATP-dependent protease La (LON) domain protein (.1) Lus10038169 [exp] 55 / 2e-07 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025930 [exp] 53 / 3e-07 AT3G24800 287 / 2e-93 proteolysis 1 (.1) Lus10016796 [exp] 49 / 3e-06 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10039127 [exp] 50 / 4e-06 AT5G39550 776 / 0.0 VARIANT IN METHYLATION 3, ORTHRUS 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10022492 [exp] 48 / 4e-06 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068100 [exp] 777 / 0 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.002G029900 [exp] 81 / 1e-16 AT1G75460 373 / 3e-131 ATP-dependent protease La (LON) domain protein (.1) Potri.005G232800 [exp] 80 / 2e-16 AT1G75460 366 / 2e-128 ATP-dependent protease La (LON) domain protein (.1) Potri.001G336832 [exp] 77 / 4e-15 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G178700 [exp] 64 / 7e-11 AT3G24800 269 / 9e-86 proteolysis 1 (.1) Potri.001G049300 [exp] 55 / 5e-08 AT3G24800 199 / 7e-61 proteolysis 1 (.1) Potri.002G241900 [exp] 54 / 1e-07 AT3G24800 314 / 2e-103 proteolysis 1 (.1) Potri.014G191400 [exp] 53 / 1e-07 AT5G48655 158 / 8e-49 RING/U-box superfamily protein (.1.2.3) Potri.006G035700 [exp] 54 / 2e-07 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.002G245500 [exp] 52 / 2e-07 AT5G48655 154 / 2e-47 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0178 [flax] [poplar] PUA PF02190 [flax] [poplar] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain
Representative CDS sequence Show only first row Show all	>Lus10015722 pacid=23167668 polypeptide=Lus10015722 locus=Lus10015722.g ID=Lus10015722.BGIv1.0 annot-version=v1.0 ATGGCCGAAGAATCGCAGACGCCTTCCTCTGTCACTGCTGTCCCTTTGGAAGGCCTCGACGACGTTGAGGATTACATTCGAGCACCTGAAGGAGATGGAT CACTGACTTGGGATCGATTTAATCATGTGTTTGATCTTGTGAAGAATGGGAACCAGGCTTTCCGAGATAACCGTTTTGAGGAGTCCATCAATTGCTACTC TAGAGCCAACAACATCAAATCGAATGATCCCGTCATTCTTGGCAATCGAAGTGCTGCTTATTGCAGGCTTAGTGAATACCTCAAGCAGAGACCTGCATCT GCTTCTGAATATAGGCCATTGAATGGGCTGGATCCTACTATACATGCTGAACTGGCACTTAAGGATGCTGAAAAGGTGTTCAACATTAGGAAGAATTCAG TGAAGTCGTACATTTTAAAGGCTGGTGCCCTTGTGTTGTTGGAGAAGTATGAGTTGGCCCACGATGTTGTTTTATCTGGTCTTGAGGTCGATCCCTCAAG CAATCCCCTCCGAGATTATCGTCAGAATTTGGAGAGAATGGTAGCTGTAACAATCAAAAGAACCTCTGCAAAGCCTGAACGCAGTGATGATTTTGATTGC ACTCTTTGTTTGAAGTTACTCTTTGAGCCCGTAACAACTCCTTGTGGTCATTCTTTTTGCCGCTCGTGTCTTTTCCAGTCCATGGATCGTGGCAATAAAT GTCCATTGTGCCGAACAGTCCTTTTCGTTGGTCCTCGAACTTGTGCAGTCAGTGTGACATTGAACAACATTATACAGAAGACTTTCCCTGTGGAATATGC TGAAAGGAAGTCTGAGAATGACAGTTTGACGAACCTTGGTGTTGATTTGATTCCTCTTTTTGTGATGGATGTTGTCATTCCATGCCAAAAGTTTCCTCTT CATATATTTGAGCCACGGTATAGATTAATGGTAAGAAGGATCATGGAAGGGAACCGTCGAATGGGAATGGTTATTGTGGATCCTCTTACAGGTGTATTGG CTGATTATGCTTGTGAAGTGGAAATTACTGAGTGCGAGCCACTTCCAGATGGGAGATTCTATCTAGAGATTGAAAGTCGTCGTAGATTTCGTGTTCTTCG GTCTTGGGATCAAGATGGATATCGTGTTGCAGAGGTTGAGTGGGTCCAAGATCATAAGCCACAACAACCAGAAGAAAAAATACAAGAATTGACAAGTAAT GCTGCAGAGTACACAAGCTCTTGGTTACAGAAAGCGAGAGAAGCTGCAAGACAAGATCGAAGAAAAATTGAAAAACTTCTCAACGTTGAAGCAATGATGC CAGCAACAACTGATCCTGAGCGTTTTAGCTTCTGGCTAGCTGCACTATCAGATAGGAGACCTAATGAAAAGTTGGAACTTCTTCGCTTAACAGATACAGC AGAGAGAATAAGAAGGGGACTGGTATATTTGAAAGCAGCAGAACAAGGTTGCAGGGTGCAGTGA
AA sequence Show only first row Show all	>Lus10015722 pacid=23167668 polypeptide=Lus10015722 locus=Lus10015722.g ID=Lus10015722.BGIv1.0 annot-version=v1.0 MAEESQTPSSVTAVPLEGLDDVEDYIRAPEGDGSLTWDRFNHVFDLVKNGNQAFRDNRFEESINCYSRANNIKSNDPVILGNRSAAYCRLSEYLKQRPAS ASEYRPLNGLDPTIHAELALKDAEKVFNIRKNSVKSYILKAGALVLLEKYELAHDVVLSGLEVDPSSNPLRDYRQNLERMVAVTIKRTSAKPERSDDFDC TLCLKLLFEPVTTPCGHSFCRSCLFQSMDRGNKCPLCRTVLFVGPRTCAVSVTLNNIIQKTFPVEYAERKSENDSLTNLGVDLIPLFVMDVVIPCQKFPL HIFEPRYRLMVRRIMEGNRRMGMVIVDPLTGVLADYACEVEITECEPLPDGRFYLEIESRRRFRVLRSWDQDGYRVAEVEWVQDHKPQQPEEKIQELTSN AAEYTSSWLQKAREAARQDRRKIEKLLNVEAMMPATTDPERFSFWLAALSDRRPNEKLELLRLTDTAERIRRGLVYLKAAEQGCRVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10015722 [exp]	0	1
AT1G69360			Plant protein of unknown funct...		Lus10036807 [exp]	1.0	0.8796
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10036711 [exp]	3.7	0.8281
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10018834 [exp]	8.5	0.8081
AT3G59060	bHLH	PIF5, PIL6	PHYTOCHROME-INTERACTING FACTOR...		Lus10029805 [exp]	11.6	0.8015
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	12.0	0.8096
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10002534 [exp]	14.5	0.8073
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10017796 [exp]	15.9	0.7913
AT5G46390			Peptidase S41 family protein (...		Lus10004545 [exp]	15.9	0.7961
AT1G71240			Plant protein of unknown funct...		Lus10002408 [exp]	16.0	0.8134
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	16.4	0.7982

Compare expression of checked genes

Lus10015722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.