Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61340 67 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003483 [exp] 319 / 1e-109 AT5G61340 153 / 2e-44 unknown protein Lus10034727 [exp] 170 / 1e-50 AT5G61340 193 / 4e-59 unknown protein Lus10021641 [exp] 168 / 8e-50 AT5G61340 191 / 5e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060900 [exp] 114 / 3e-29 AT5G61340 164 / 5e-48 unknown protein Potri.012G068000 [exp] 77 / 3e-16 AT5G61340 154 / 2e-45 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015723 pacid=23167679 polypeptide=Lus10015723 locus=Lus10015723.g ID=Lus10015723.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCAACAAAACAACAATCCCCGACTTCGATCCTCAGAACCTCAATCTTCACTTTCCTCAGACACCTCCAATTCTTCATATCAACACCATCCT TCCTCGCCTTCCCTTTCTCAGCTTCTATCCTCCTCTCCCAATCATCCATTCTACAAAAGTATTCAGTACTTGGGTTCGAACCCTCTTCACAGTTCCTCAA AATCATCACTATCAAGCTTCCCCACTCCATATTCACCGTCCCATTTTCCCTCACTTTCCTCCTCTTCGCCAAATCCTCTGTTTTCTCCTTCTTGAAAAAC AGAGCAGCTCATGAAATCGAATCCGTCATTGTCTCTTCTTCCATCTTCTGGCCGCTGTTCCGGACTCAAATAGCCAGTTCGATCTTTCTGTCTGCAATTA AAGTATCATCCTCAATCTTCCTTTTCATCTCTTTCAACTTATTCCAACTCTCTGTTTTTTCCCCTGTTTTCCTCATCCTGATTTCTACTCCTGGAGCGGT GGTTTGCTCCGTCTTCGGCGAACTGGCTGCCGTTGTATCCGGAATGGAGCTTCGAGGAGGGTATTCAGCGGTTTTGAAGGCGGCGGCGATGGTGAGGCGG GGAAGGGCTTCTTCGACGGCTCTGTCTCTGGCTCTGCCGTTGAATTTGGCTATGGCGGCGATTGAAGCTCTGTTTCGGTACAGGATAGTCAGAGGATATC AATGTTTACAAACGACGTCATTTTCATCGCTCAAGGTGCTGCTGATCATTGGTTTGGAAGGGATTCTGATTTGCTATATGTATTCAATGGTTGTAGTTCT TAACGTCATTGCCGGATGCTTCTTGTTCTGGAGTCTAAAGGAAGAAGATATTGTTTTGAGTAAATGA
AA sequence Show only first row Show all	>Lus10015723 pacid=23167679 polypeptide=Lus10015723 locus=Lus10015723.g ID=Lus10015723.BGIv1.0 annot-version=v1.0 MAAATKQQSPTSILRTSIFTFLRHLQFFISTPSFLAFPFSASILLSQSSILQKYSVLGFEPSSQFLKIITIKLPHSIFTVPFSLTFLLFAKSSVFSFLKN RAAHEIESVIVSSSIFWPLFRTQIASSIFLSAIKVSSSIFLFISFNLFQLSVFSPVFLILISTPGAVVCSVFGELAAVVSGMELRGGYSAVLKAAAMVRR GRASSTALSLALPLNLAMAAIEALFRYRIVRGYQCLQTTSFSSLKVLLIIGLEGILICYMYSMVVVLNVIAGCFLFWSLKEEDIVLSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61340			unknown protein		Lus10015723 [exp]	0	1
AT5G52450			MATE efflux family protein (.1...		Lus10017998 [exp]	7.3	0.6817
AT4G35840			RING/U-box superfamily protein...		Lus10041859 [exp]	11.8	0.6712
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	15.3	0.6640
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10014535 [exp]	21.6	0.6632
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	25.9	0.6547
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	34.3	0.6615
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10010884 [exp]	34.7	0.6453
AT1G15060			Uncharacterised conserved prot...		Lus10013496 [exp]	45.2	0.6389
AT5G47040		LON2	lon protease 2 (.1)		Lus10001084 [exp]	48.4	0.6390
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	50.3	0.6272

Compare expression of checked genes

Lus10015723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.