Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07740 670 / 0 actin binding (.1) AT2G25050 503 / 1e-158 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT5G07770 487 / 2e-157 Actin-binding FH2 protein (.1.2) AT1G31810 498 / 2e-155 AFH14 Formin Homology 14 (.1) AT3G32400 451 / 1e-146 Actin-binding FH2/DRF autoregulatory protein (.1) AT5G07650 447 / 5e-141 Actin-binding FH2 protein (.1) AT5G07780 432 / 6e-140 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G58160 457 / 2e-139 actin binding (.1) AT5G07760 419 / 7e-130 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 192 / 1e-54 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003482 [exp] 1255 / 0 AT5G07740 714 / 0.0 actin binding (.1) Lus10035830 [exp] 494 / 3e-153 AT5G58160 619 / 0.0 actin binding (.1) Lus10007447 [exp] 488 / 5e-152 AT5G58160 604 / 0.0 actin binding (.1) Lus10036612 [exp] 491 / 4e-151 AT5G58160 608 / 0.0 actin binding (.1) Lus10024450 [exp] 481 / 4e-149 AT5G58160 600 / 0.0 actin binding (.1) Lus10023804 [exp] 481 / 9e-149 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10003956 [exp] 479 / 6e-148 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10017556 [exp] 405 / 2e-131 AT5G07740 392 / 1e-124 actin binding (.1) Lus10015725 [exp] 268 / 1e-82 AT5G07740 282 / 6e-88 actin binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067900 [exp] 768 / 0 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 767 / 0 AT5G07740 722 / 0.0 actin binding (.1) Potri.006G185601 [exp] 512 / 4e-168 AT5G58160 603 / 0.0 actin binding (.1) Potri.018G108000 [exp] 516 / 4e-163 AT5G58160 600 / 0.0 actin binding (.1) Potri.006G185501 [exp] 492 / 4e-162 AT5G58160 598 / 0.0 actin binding (.1) Potri.006G263700 [exp] 508 / 3e-158 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.018G019600 [exp] 508 / 1e-157 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.003G103800 [exp] 499 / 4e-155 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.002G240232 [exp] 133 / 4e-31 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 131 / 1e-30 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF10409 [flax] [poplar] PTEN_C2 C2 domain of PTEN tumour-suppressor protein CL0154 [flax] [poplar] PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10015724 pacid=23167640 polypeptide=Lus10015724 locus=Lus10015724.g ID=Lus10015724.BGIv1.0 annot-version=v1.0 ATGGCGCTGTTCAGACGCTTCTTCTATCGGAAGCCGCCCGATCGGCTTCTGGAGATCTCTGAGAGAGTCTACGTTTTCGACTGTTGCTTCTCCACGGATG TCATGGAAGAAGATCAGTACAAGCTGTACTTAGGTGGCATTGTAGCACAGCTGCAGGATTACTTTCCCGATTCTTCCTTTATGGTGTTTAACTTTAGAGA AGGAGATAGACGGAGCCAAATTTCTGACATCTTGACGCAGTATGACATGACAGTTATGGATTACCCACGTCAACACGAAGGATGTCCATTGCTGCCTCTG GAGATGGTTCATCATTTCCTACGATCCAGTGAAAGCTGGTTGTCATTGGAGGGGCAGCAAAATGTGCTGTTAATGCACTGCGAAAGAGGTGGATGGCCTG TGCTTGCTTTCATGCTTGCTGGTCTTTTGTTATATAGGGGGCAGTATAGTGGAGAGCAGAAGACTCTCGAAACGGTTTATAAACAAGCCCCTCGAGAGCG TCTACATTTTTTGTCGCCTTTAAATCCATACCCTTCCCAGCTTAGATATCTTCAGTATATTTCTAGAAGAAATCTTGGAGTTGATTGGCCTCCTTCCGAC ACGCCATTAATTCTCGACTGCTTGATGCTAAGATCCATTCCTTTGTTCGAAGAAGGAAAGGGTTGTAGGCCAGTTGTGCGTGTTTATGGCCAGGATCCTT CAAACCCCGCCAATAGAACGTCTAAGCTTTTGTATTCAACTACGAAGACTAAAAAACAAATACGACAGTATGTACAGGAAGAGTGCATGCTTGTGAAAGT AGATCTTAGGTGCCGTGTTCAAGGCGATGTTGTTATTGAATGTGTCCACTTAGACGAGGACCTCCTGCATGAAGAAATGATCTTCAGACTGATGTTCCAC ACAGCATTTGTGCGAGCAAATGTTTTGATGCTAAGTCGTGATGACATCGATATTATGTGGGATGCCAAAGATCAATTTCCACGGGAATTCAGGGCAGAGG TACTTTTTGCTGATGCCGACACTATTCTACCGCCTCTCACCAGAGTTCTAACCGGTGAGGATCTAGATGATTCAGAAAGTCCCACACCTGAGGAATTTTA TGAGGTGGAAGAGATATTCACAGTGGATGCACCGGAATCAAAAGGGAATTTTGATTTTAATAAAACCAAGAAGTCATCCCAATTAGAGTTTGCAGAAGTT GTGAGAGAGGATGTGGATGTGCCCTCTTTCCAAGATTGTAGAGTCGATGATGTCCACAAGCAAAACAGGAAGCTTAATTCTAATGTGGATGCTGTGAAGG ATATTGCTGTAGATGATGTGAAGTACAGAATGGACGATAAGGAGATTTCTGATCTTGAAGCAGTGAAAGATATTACCGTTGATAACGGGAATATGCAGTT TGGTCTCAGAAATACCATTTCTGATGTCCAGATAAATGAGGAAACAGATGTGATCACTTATGAAGCAGCTGAAGAATTCAAAATGACTGCAGATAAAGCT GATGGAGCAAGCAGTTCAAATTTAAAGTTAGAACCGAATGTCGTATTACAGAAGCTGACTACTGAATTTGATAGAGAGAAACCGGAGAAACTGGAACAGC CTTCTCCCTTATGGCATTTTGTGGCTAACACAAAGCCTCCAGAATCGATGCTTGCTAGGCAAAAGAAACAGGGTTTTATTTTGGGCGAGAATTTAAGACA GATAAAGCCAGACGCTCCACCACTGTGGGTGCTACATAACAAAGGTCCAGTAAGCAGTCTAATGAACGCATCACTTCCACCTTCCAGGTATAATAGTGCA CCACCTGATTTTCCTCGTCTTCTTGAAGAGGCCACTGCTGGTGCCAATGAAAAGTCGTCCTCTACTGCTCCTATCCAAGTTTTGGATTCAAGTAAGTTGA TTCCTTCTTCAGCTGATGATCAAGGACAGACAGCATCCATCCTTGTATCTTCTGCAGCCTCAGGCCCGCAGCTGTCACCACCACCCATGGGAACCCCTCC TCCGCCACCACCTCTTCCATCAATGAGTGGAGCTCCTCCCCCACCGCCTCCTCCTCCATCGATGAGTGGCGCTCCACCTCCTCCCCCACCTCCGTTTCGT GGAGCCCCACCTCCTCCTCCAATGCCAGGAGCACCTCCTCCACCCCCACTTCCGGGAGGTGGGCGTGCACCTCCTCCGCCGCCTCCTCCGGGAGGTGGAT TTGCGCCTCCTCCACCACCTCCTCCAGGAGGTGGGCGTGGACCTCCTCCACCTCCTCCCCCCGGAGGACGTGTCCCAGGACCTCCAGGTGCTGGACCGCC TCCACCACCACCATTAGGTGCAAAAGGAGCTGATGCAAGAGGCGGACCAGGTAGAGGACGAGGGCGTGGGGGTGCTGCTATGGCATCTCGAAGATCTTCT TTGAAGCCTTTGCACTGGAGCAAGGTAACTAGGGCAATACAAGGAAGCTTGTGGGAAGAACTGCAGAGGCATGGGGAGACTCAAATTGCACCAGCAGAAT TTGACGTGTCAGAGATAGAGACCCTTTTTTCTGCAATAGTTCCAAAACCTGCTGACTCGAGTAGAACGAAAAAAAAGGCTGCTGGATCAAAACCTGACAA AGTTCAATTGATTGATCTGAGGAGGGCAAATAATACTGAAATTATGCTTACAAAAGTTAAAATGCCTCTTTCAGACATGATGGCTGCAGTACTTGCCATG GATGAGTCAGTTTTAGATGTTGATCAAGTGGACAACCTTATAAAATTCTGTCCAACGAAAGAAGAGATGGAACAACTCAAGAACTACACTGGCGACAAGG AACTCTTGGGAAGGTGTGAACAGTACTTCTTGGAGCTGATGAAAGTACCACGCGTGGAATCAAAATTAAGAGTATTTTCATTCAAAATGATGTTCAATAC TCAGATCACAGAATTCAAGAGGAGCTTAAACACGGTGAACTCTGCCTGTGATGAGGTTAGAAACTCCGTCAAACTGAAGGAAATCATGAAGAAGATTCTG TATTTGGGGAACACTTTGAATCAAGGCACTGCAAGGGGTGCTGCAATTGGATTCAAGTTGGACAGTCTTTTGAAGCTTACTGATACACGTGCTGCTAACA GCAAGATGACACTTATGCATTATCTTTGTAAGGTACTTGCTGCGAAGTCGCCGCCGCTTTTGGATTTTCACCTTGATCTGGTCAGCATTGAAACTGCCAC AAAGATACAATTGAAATCTTTAGCTGAGGAAATGCAAGCTATCATCAAGGGATTGGAAAAGGTAAAACAGGAGAATGCAGCTTCAGCAAATGACGGCCCT GTATCTGACGTCTTCAGAAAGGCGTTGAAAGAATTCATTTCCGGTGCTGAGGCAGAGGTGGCATCCGTGACCAATTTATACTCTGTGGTGGGTAGAAATG CAGATGCACTTGCGTTATACTTTGGTGAGGATCCTGCTCGGTATCCTTTTGAGCAAGTTACTGCAACCCTCTTGAACTTTGTGAAGTTGTTCCGGAAAGC ACATGACGAGAATTTGAAGCAGGCTGAAGCGGATAAGAAGAAAGCTGAGAAGGACGCAGAAATGGAGAAGGCAAAGGCATCGAAGAAAAGCGATACGTAG
AA sequence Show only first row Show all	>Lus10015724 pacid=23167640 polypeptide=Lus10015724 locus=Lus10015724.g ID=Lus10015724.BGIv1.0 annot-version=v1.0 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVMEEDQYKLYLGGIVAQLQDYFPDSSFMVFNFREGDRRSQISDILTQYDMTVMDYPRQHEGCPLLPL EMVHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRGQYSGEQKTLETVYKQAPRERLHFLSPLNPYPSQLRYLQYISRRNLGVDWPPSD TPLILDCLMLRSIPLFEEGKGCRPVVRVYGQDPSNPANRTSKLLYSTTKTKKQIRQYVQEECMLVKVDLRCRVQGDVVIECVHLDEDLLHEEMIFRLMFH TAFVRANVLMLSRDDIDIMWDAKDQFPREFRAEVLFADADTILPPLTRVLTGEDLDDSESPTPEEFYEVEEIFTVDAPESKGNFDFNKTKKSSQLEFAEV VREDVDVPSFQDCRVDDVHKQNRKLNSNVDAVKDIAVDDVKYRMDDKEISDLEAVKDITVDNGNMQFGLRNTISDVQINEETDVITYEAAEEFKMTADKA DGASSSNLKLEPNVVLQKLTTEFDREKPEKLEQPSPLWHFVANTKPPESMLARQKKQGFILGENLRQIKPDAPPLWVLHNKGPVSSLMNASLPPSRYNSA PPDFPRLLEEATAGANEKSSSTAPIQVLDSSKLIPSSADDQGQTASILVSSAASGPQLSPPPMGTPPPPPPLPSMSGAPPPPPPPPSMSGAPPPPPPPFR GAPPPPPMPGAPPPPPLPGGGRAPPPPPPPGGGFAPPPPPPPGGGRGPPPPPPPGGRVPGPPGAGPPPPPPLGAKGADARGGPGRGRGRGGAAMASRRSS LKPLHWSKVTRAIQGSLWEELQRHGETQIAPAEFDVSEIETLFSAIVPKPADSSRTKKKAAGSKPDKVQLIDLRRANNTEIMLTKVKMPLSDMMAAVLAM DESVLDVDQVDNLIKFCPTKEEMEQLKNYTGDKELLGRCEQYFLELMKVPRVESKLRVFSFKMMFNTQITEFKRSLNTVNSACDEVRNSVKLKEIMKKIL YLGNTLNQGTARGAAIGFKLDSLLKLTDTRAANSKMTLMHYLCKVLAAKSPPLLDFHLDLVSIETATKIQLKSLAEEMQAIIKGLEKVKQENAASANDGP VSDVFRKALKEFISGAEAEVASVTNLYSVVGRNADALALYFGEDPARYPFEQVTATLLNFVKLFRKAHDENLKQAEADKKKAEKDAEMEKAKASKKSDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07740			actin binding (.1)		Lus10015724 [exp]	0	1
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10008369 [exp]	2.0	0.9377
AT4G00440			Protein of unknown function (D...		Lus10028148 [exp]	3.5	0.9335
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10013178 [exp]	4.5	0.9318
AT2G01480			O-fucosyltransferase family pr...		Lus10021790 [exp]	5.8	0.9070
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	6.9	0.9324
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Lus10036171 [exp]	7.7	0.9303
AT5G54200			Transducin/WD40 repeat-like su...		Lus10039934 [exp]	8.0	0.9261
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10042843 [exp]	8.5	0.9253
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10024056 [exp]	8.9	0.9250
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Lus10009635 [exp]	8.9	0.9186

Compare expression of checked genes

Lus10015724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.