Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07740 225 / 4e-68 actin binding (.1) AT2G25050 192 / 9e-57 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT1G31810 179 / 5e-52 AFH14 Formin Homology 14 (.1) AT5G58160 174 / 2e-50 actin binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003482 [exp] 244 / 1e-74 AT5G07740 714 / 0.0 actin binding (.1) Lus10015724 [exp] 242 / 4e-74 AT5G07740 723 / 0.0 actin binding (.1) Lus10017556 [exp] 179 / 2e-55 AT5G07740 392 / 1e-124 actin binding (.1) Lus10035830 [exp] 184 / 8e-54 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 184 / 8e-54 AT5G58160 608 / 0.0 actin binding (.1) Lus10003956 [exp] 181 / 1e-52 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10023804 [exp] 180 / 3e-52 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10024450 [exp] 93 / 5e-22 AT5G58160 600 / 0.0 actin binding (.1) Lus10007447 [exp] 81 / 1e-17 AT5G58160 604 / 0.0 actin binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067900 [exp] 237 / 2e-72 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 234 / 2e-71 AT5G07740 722 / 0.0 actin binding (.1) Potri.006G185501 [exp] 186 / 2e-56 AT5G58160 598 / 0.0 actin binding (.1) Potri.018G108000 [exp] 191 / 5e-56 AT5G58160 600 / 0.0 actin binding (.1) Potri.003G103800 [exp] 166 / 1e-47 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.006G263700 [exp] 164 / 1e-46 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.018G019600 [exp] 160 / 2e-45 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF10409 [flax] [poplar] PTEN_C2 C2 domain of PTEN tumour-suppressor protein
Representative CDS sequence Show only first row Show all	>Lus10015725 pacid=23167663 polypeptide=Lus10015725 locus=Lus10015725.g ID=Lus10015725.BGIv1.0 annot-version=v1.0 ATGACAGTTATGGATTTCCCTCGTCAACACGAAAAATTTCCATTGCTGCCTCTGGAGACGGTTCATCATTTCCTAAGTCACTGGAGGGGCAGCAAAACGT ACGTGCTGTTAATGCACTGCGAAAGAGGTGGATGGCCTGTGCTTGCTTTCATGCTTGCTGGTCTTTTGTTATATAGGGGGCAGTATAGTGGAGAGCAGAA GACTCTTGAAATGATTTATAGTCAAGCCCCTCCAGACCTTCTCTGTTCTTTGTCAGCTTTAAATCCGTACCCTTCCCAGCTTAGATATCTTCAGTATATT TCCAGAAGAAATTACGGAGGCGATTGGCCTCCTTCGGACAGACCATTGATTCTCGTCTGCTTGATGCTTAGATCCATTCCACTGTTTGAAGGAGGAAATG GTTGTAGGCCGGTTGTGCGTGTTTATACTGCAGAGTTGATGTCTCGTGAATATCTACTGCGGGAAGATCAGTGCGTGGTTGTGAGAGTAGATGTTAGGTG CCGTGTTCAAGGCGATGTTGTTATTGAATGTGTCCACATCGGCGAGATTATCTTCAGAGTGATGTTCCACACAGCATTTGTGCGATGA
AA sequence Show only first row Show all	>Lus10015725 pacid=23167663 polypeptide=Lus10015725 locus=Lus10015725.g ID=Lus10015725.BGIv1.0 annot-version=v1.0 MTVMDFPRQHEKFPLLPLETVHHFLSHWRGSKTYVLLMHCERGGWPVLAFMLAGLLLYRGQYSGEQKTLEMIYSQAPPDLLCSLSALNPYPSQLRYLQYI SRRNYGGDWPPSDRPLILVCLMLRSIPLFEGGNGCRPVVRVYTAELMSREYLLREDQCVVVRVDVRCRVQGDVVIECVHIGEIIFRVMFHTAFVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07740			actin binding (.1)		Lus10015725 [exp]	0	1
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	1.4	0.9040
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	4.2	0.8682
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	5.5	0.8205
AT5G61220			LYR family of Fe/S cluster bio...		Lus10003467 [exp]	10.0	0.7328
					Lus10042279 [exp]	11.9	0.8375
AT2G06025			Acyl-CoA N-acyltransferases (N...		Lus10021559 [exp]	15.0	0.8184
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Lus10010561 [exp]	15.5	0.7668
AT1G28250			unknown protein		Lus10014006 [exp]	16.1	0.8019
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011012 [exp]	16.9	0.7918
AT1G53120			RNA-binding S4 domain-containi...		Lus10041931 [exp]	17.0	0.7942

Compare expression of checked genes

Lus10015725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.