Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60440 97 / 3e-24 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 91 / 2e-22 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT4G36590 87 / 9e-21 MADS MADS-box transcription factor family protein (.1) AT4G24540 84 / 8e-20 MADS AGL24 AGAMOUS-like 24 (.1) AT2G22540 82 / 4e-19 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) AT5G51860 81 / 9e-19 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT1G65360 80 / 2e-18 MADS AGL23 AGAMOUS-like 23 (.1) AT1G72350 80 / 3e-18 MADS MADS-box transcription factor family protein (.1) AT2G34440 78 / 4e-18 MADS AGL29 AGAMOUS-like 29 (.1) AT1G01530 79 / 7e-18 MADS AGL28 AGAMOUS-like 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003481 [exp] 266 / 1e-91 AT5G60440 99 / 7e-25 AGAMOUS-like 62 (.1) Lus10037450 [exp] 248 / 4e-84 AT5G60440 101 / 7e-26 AGAMOUS-like 62 (.1) Lus10003940 [exp] 246 / 3e-82 AT5G60440 102 / 2e-25 AGAMOUS-like 62 (.1) Lus10031073 [exp] 89 / 2e-21 AT5G60440 129 / 5e-36 AGAMOUS-like 62 (.1) Lus10025719 [exp] 87 / 2e-21 AT2G22540 286 / 4e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10035456 [exp] 88 / 4e-21 AT5G60440 124 / 5e-34 AGAMOUS-like 62 (.1) Lus10012449 [exp] 86 / 3e-20 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10020511 [exp] 84 / 7e-20 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10035942 [exp] 86 / 9e-20 AT2G22540 307 / 1e-104 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G118900 [exp] 149 / 2e-45 AT5G60440 123 / 4e-34 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 96 / 3e-24 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 94 / 1e-23 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 93 / 3e-23 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 92 / 4e-23 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.002G105600 [exp] 90 / 3e-22 AT2G22540 288 / 3e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.017G040700 [exp] 89 / 6e-22 AT5G60440 122 / 5e-34 AGAMOUS-like 62 (.1) Potri.001G251400 [exp] 87 / 4e-21 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.005G155300 [exp] 86 / 9e-21 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G010800 [exp] 86 / 2e-20 AT2G22540 329 / 3e-115 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10015726 pacid=23167716 polypeptide=Lus10015726 locus=Lus10015726.g ID=Lus10015726.BGIv1.0 annot-version=v1.0 ATGACCAGCGGAGCGGCGGGTAAGAAGGCGAAGAAGCCGAGCAAGGGTCGTCAGAAAATCGAGATAAAGAAAATCGAGAACGACGCCAACCGCTACGTCA CCTTCTCGAAGAGGAAGAGCGGACTGTTCAAGAAGGCGACGGAGCTCTCCACACTCTGTGGGGCCCAGGTAGCGGTCATCATCTTCTCCGGGCACCACAA AGTCTTCTCCTGCGGCCGCCCGGACGTCGATTCCGTCCTCCGCCGTTACCAACTCCACAGCCCTAATTTAACCCTAAACCCTAATAATAATGATCGCCGT GGCAATGCTGTAAATTACAGCGATTGTAAGGCCAGCTTCGGGATTGACAACGTGATAATGGCGAGCAGGGAGAGCGTGCAGAAGCAGGAGTACGTGAAGG CTGTGAAGATGCTGGAGGAAGGGAAGAGGCACGTGGCCGCTCAGGCGGGTTTGGGTGATCCGACGACGGTGTCAGGGGGTTTCTGGTGGGAGGATTGGGC TGTGGATGCGATGGAGGAGAAGGACCAAGTTCAGTCGTGTAAGGAGTCACTGATGGAGCTGAAGGAGAAGGTTTCGGCTAGGCTTGGCTCGATGGGATGA
AA sequence Show only first row Show all	>Lus10015726 pacid=23167716 polypeptide=Lus10015726 locus=Lus10015726.g ID=Lus10015726.BGIv1.0 annot-version=v1.0 MTSGAAGKKAKKPSKGRQKIEIKKIENDANRYVTFSKRKSGLFKKATELSTLCGAQVAVIIFSGHHKVFSCGRPDVDSVLRRYQLHSPNLTLNPNNNDRR GNAVNYSDCKASFGIDNVIMASRESVQKQEYVKAVKMLEEGKRHVAAQAGLGDPTTVSGGFWWEDWAVDAMEEKDQVQSCKESLMELKEKVSARLGSMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10015726 [exp]	0	1

Compare expression of checked genes

Lus10015726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.