Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18670 807 / 0 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G74330 777 / 0 Protein kinase superfamily protein (.1.2) AT5G39420 563 / 0 CDC2CAT CDC2C (.1) AT1G53050 554 / 0 Protein kinase superfamily protein (.1) AT1G54610 538 / 0 Protein kinase superfamily protein (.1.2.3) AT3G01085 537 / 0 Protein kinase superfamily protein (.1) AT1G09600 531 / 2e-180 Protein kinase superfamily protein (.1) AT1G71530 499 / 1e-171 Protein kinase superfamily protein (.1.2) AT1G33770 498 / 6e-169 Protein kinase superfamily protein (.1) AT5G44290 498 / 3e-168 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034726 [exp] 893 / 0 AT1G18670 782 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10021642 [exp] 828 / 0 AT1G18670 736 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10012805 [exp] 568 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 563 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025773 [exp] 559 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 558 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10004144 [exp] 558 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 554 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10028890 [exp] 537 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067800 [exp] 955 / 0 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.015G061400 [exp] 943 / 0 AT1G18670 846 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.017G088200 [exp] 635 / 0 AT5G39420 647 / 0.0 CDC2C (.1) Potri.008G204400 [exp] 569 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 561 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G399700 [exp] 560 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 558 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.011G119400 [exp] 557 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 552 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 543 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10015727 pacid=23167719 polypeptide=Lus10015727 locus=Lus10015727.g ID=Lus10015727.BGIv1.0 annot-version=v1.0 ATGGGTTGCGTCACCTCCAAGCAAGCGGTCACCGTCACGCCGGCGCTCGACCATTCCGGCGGCCTCAACTCAGGGCGGATCCGGGTCTCATCGGACCCCG AGAACGTCCAGAAGGCCAGCTACCAGCTCTACCACCTCCAGAAAGATGGAAGCGGAAGAAAGAAGGGCGGTGGTGGTGGCGGGGATGGTTACGGTTACGG TTACGGCTCCGTCGACTTGGGGGGGTCGGGTCGGGGCAGCTCCAACGGGGACTCCACCAGTTTTAGGTTGAGGAATCTGCACAAGTACGTCGAAGGAGAG CAGGTCGCCGCCGGTTGGCCCGCCTGGCTTAGCGCCGTCGCCGGTGAAGCCATCCACGGCTGGGTTCCCCTGAAGGCCGATGCATTCGAGAAATTAGACA AGATAGGTCAAGGAACGTACAGCAGCGTGTTTAGAGCGAAAGAGCTCGAGACTGGGAGGATAGTTGCTTTGAAGAAGGTCCGGTTCGACAATTTCGAGCC TGAGAGTGTGAGGTTTATGGCAAGGGAGATTATGATTCTCCGCCGGCTTGATCACCCCAATGTGATGAAATTAGACGGCTTGATTACATCCCATCTATCC TGCAGCATATACCTTGTATTTGAGTACATGGAACATGACATTACCGGGCTGCTTTCTTGCCCTGATGTTAGGTTTACTGAGTCACAGATCAAGTGCTACA TGAAACAGTTATTGTCTGGAATTGAGCATTGCCACTCCAAAGGTGTAATGCATAGGGATATTAAAGGTTCGAATCTTCTTGTGAATAACCAAGGAGTACT GAAAGTAGCTGATTTTGGGTTGGCGAACTTCTGCACTTCTGGAAATAGGCAGCCTTTAACTAGCAGAGTTGTGACTTTGTGGTATCGTCCTCCTGAACTT CTGCTCGGTTCGACCACTTACGGAGCTTCTGTGGATCTTTGGAGTGTTGGCTGTGTATTTGCCGAACTTCTCCTTGGGAAACCCATCCTGCAAGGAAGGA CTGAGGTTGAACAGTTGCATAAAATTTTCAAGCTGTGTGGCTCCCCACCTGATGAGTATTGGAAGAAATCCAAGCTTCCTCACTCGACATTATTCAAACC ACAGCAGCATTATGAAAGTTGCCTTCTTCCGACTTTTAAGGATTTACCTGAGAATGCAGTCAGTCTCATTGATACTCTACTTTCCGTGGAGCCATATAAA CGTGGAACTGCAGCCTTTGCTCTTTCATCCGAGTACTTCACCACGAAGCCTTATGCTTGTGAACCGTCTAGCTTACCTGAATACCCTCCTAGCAAAGAGA TTGATGCAAAGAACCGCGAGGAAGCTAGAAGGAAAAAGATCAGTGGGAGAAACCGTGGTGCTGAAGCAAGAAAACCATTGCGAAAACCCTGCCCTGTCAA CAAACTGGTACCCACAGAGGATCTGACAGCTCGAGTACAATTTGGTCAAAGTGCAATTAGCAACAATGTTGGCTCTCTTCCTAATGGGAGAAAGATAAGG CCAAACTTGGATGCAAGGAAACCATCCCTTGAGAAACTGGATGAGGCCCTTGAGAAACTGGATGAGGTTTTCCATGTCAAGAATGCTTCTTCTCAAGGAG ACATTCCCTTCTCGGGGCCTTTGCAAGTTTCTACTTCTAGTGGATTTGCGTGGGCGAGAAGGAGAAAAGATGACGCATCTGCTGCTAGATCACACACTAG GTCAAGTTCCAAATGTCAAGTTAGTAATGGATTGGATCCTTCACGCGTGATTGGTGACAAAGATAGTATTGACTCAAAGCGGCATGAGTTTGGAGATAGT GAAAGCGGGGCGAGTAGTAGCTCTAGAGGGCGCGACTCGTATGATGTTTCCAAGCGATCTTTGGAGAAAAAGTGGAGAGAGTTTGAACGTCCAGATTCTT TTGATGCTTCTGAAGATTACCATTCACAAGAACTGTCATCGGCATTTTATCAAAGAGAGGGACTGGACACCAGAAGAACTAATTTGGGTTTCCAAGATCA GGGAGACAAGGTTGAATTTTCAGGACCACTGTTATCTCAGTCGCATAGAGTGGACGAGCTATTGCAAAGACACGAGCGCCACATTCGTCAAGTGGTCCGG AAGTCGTGGTTTCAAAAAGGTAACAAAGAAAATTCTACATGA
AA sequence Show only first row Show all	>Lus10015727 pacid=23167719 polypeptide=Lus10015727 locus=Lus10015727.g ID=Lus10015727.BGIv1.0 annot-version=v1.0 MGCVTSKQAVTVTPALDHSGGLNSGRIRVSSDPENVQKASYQLYHLQKDGSGRKKGGGGGGDGYGYGYGSVDLGGSGRGSSNGDSTSFRLRNLHKYVEGE QVAAGWPAWLSAVAGEAIHGWVPLKADAFEKLDKIGQGTYSSVFRAKELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNVMKLDGLITSHLS CSIYLVFEYMEHDITGLLSCPDVRFTESQIKCYMKQLLSGIEHCHSKGVMHRDIKGSNLLVNNQGVLKVADFGLANFCTSGNRQPLTSRVVTLWYRPPEL LLGSTTYGASVDLWSVGCVFAELLLGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHSTLFKPQQHYESCLLPTFKDLPENAVSLIDTLLSVEPYK RGTAAFALSSEYFTTKPYACEPSSLPEYPPSKEIDAKNREEARRKKISGRNRGAEARKPLRKPCPVNKLVPTEDLTARVQFGQSAISNNVGSLPNGRKIR PNLDARKPSLEKLDEALEKLDEVFHVKNASSQGDIPFSGPLQVSTSSGFAWARRRKDDASAARSHTRSSSKCQVSNGLDPSRVIGDKDSIDSKRHEFGDS ESGASSSSRGRDSYDVSKRSLEKKWREFERPDSFDASEDYHSQELSSAFYQREGLDTRRTNLGFQDQGDKVEFSGPLLSQSHRVDELLQRHERHIRQVVR KSWFQKGNKENST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	0	1
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	1.4	0.9333
AT2G26100			Galactosyltransferase family p...		Lus10014451 [exp]	2.0	0.9279
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10011863 [exp]	2.8	0.9007
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015325 [exp]	3.2	0.8973
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10025995 [exp]	3.7	0.8835
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10024965 [exp]	3.9	0.9151
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10038106 [exp]	4.2	0.8843
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10015666 [exp]	7.7	0.8733
AT3G07400			lipase class 3 family protein ...		Lus10009590 [exp]	9.2	0.8575
AT2G40070			unknown protein		Lus10011374 [exp]	9.5	0.8701

Compare expression of checked genes

Lus10015727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.