Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18680 244 / 2e-83 HNH endonuclease domain-containing protein (.1) AT3G47490 134 / 1e-39 HNH endonuclease (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003480 [exp] 314 / 3e-111 AT1G18680 246 / 2e-84 HNH endonuclease domain-containing protein (.1) Lus10034462 [exp] 129 / 2e-36 AT3G47490 239 / 8e-78 HNH endonuclease (.1.2.3) Lus10019092 [exp] 99 / 2e-25 AT3G47490 206 / 4e-66 HNH endonuclease (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067700 [exp] 258 / 3e-89 AT1G18680 248 / 9e-85 HNH endonuclease domain-containing protein (.1) Potri.009G004200 [exp] 131 / 5e-39 AT3G47490 241 / 2e-81 HNH endonuclease (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0263 [flax] [poplar] His-Me_finger PF01844 [flax] [poplar] HNH HNH endonuclease
Representative CDS sequence Show only first row Show all	>Lus10015728 pacid=23167649 polypeptide=Lus10015728 locus=Lus10015728.g ID=Lus10015728.BGIv1.0 annot-version=v1.0 ATGAGCAGCTCTCCTCCGCCGCCGCAGTCGCCTCGAGGTAGTGGTAGTGGCAGTAGCGGTAACACTAACAAACACAACCCAAGATTCTTCGACCAAAAGA CCAAAAACCTCTGCTGGGCTAAAGCCGACCAGGTTCCTGGCCGACACCCGGAGCGGTGGCGCAAAGATGCCGCCGGCAATATAGTCTGCAGGCGCTTCTG CAATTGCCAGGGTTGCCTCTGCTTCGAGTACGATCACATCATTCCCTTCTCCAAAGGTGGTGAATCAGTAGTGGAAAATTGCCAGATACTTCAAACTCGT GTCAACAGATACAAATCAGACAGACAAGAGATTGACAAAACTCTACTCAGAGGATACTCTTGCGATATTCACTTCACTGATAAGGACCTGGACATTATTG AGATGGCTGTTTATGGAGACGTCGTCCGGCCTGGGAACCAGTGTCGGTGCAGAAGCGTTGCTGAAATGCTTGGCCAGTTCAAGTCCAAGGATCAAACCCC TGCCTGCAAAATGCCAGGTGAATGA
AA sequence Show only first row Show all	>Lus10015728 pacid=23167649 polypeptide=Lus10015728 locus=Lus10015728.g ID=Lus10015728.BGIv1.0 annot-version=v1.0 MSSSPPPPQSPRGSGSGSSGNTNKHNPRFFDQKTKNLCWAKADQVPGRHPERWRKDAAGNIVCRRFCNCQGCLCFEYDHIIPFSKGGESVVENCQILQTR VNRYKSDRQEIDKTLLRGYSCDIHFTDKDLDIIEMAVYGDVVRPGNQCRCRSVAEMLGQFKSKDQTPACKMPGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18680			HNH endonuclease domain-contai...		Lus10015728 [exp]	0	1
AT2G44850			unknown protein		Lus10028204 [exp]	2.6	0.8445
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10020392 [exp]	4.7	0.8422
AT3G29280			unknown protein		Lus10018197 [exp]	7.2	0.7831
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	8.1	0.8020
AT4G13200			unknown protein		Lus10022803 [exp]	9.0	0.7961
AT1G27695			glycine-rich protein (.1.2)		Lus10032855 [exp]	12.0	0.8054
AT2G43190			ribonuclease P family protein ...		Lus10026483 [exp]	14.1	0.8331
AT4G39235			unknown protein		Lus10004160 [exp]	14.7	0.7963
AT5G42850			Thioredoxin superfamily protei...		Lus10037477 [exp]	16.3	0.7830
AT1G56423			unknown protein		Lus10029844 [exp]	21.7	0.8001

Compare expression of checked genes

Lus10015728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.