Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74360 511 / 1e-162 Leucine-rich repeat protein kinase family protein (.1) AT5G07180 300 / 3e-86 ERL2 ERECTA-like 2 (.1) AT5G62230 297 / 4e-85 ERL1 ERECTA-like 1 (.1.2) AT2G26330 291 / 6e-83 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT2G01950 289 / 3e-81 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT5G63930 280 / 3e-78 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 272 / 2e-75 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 265 / 7e-73 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 263 / 2e-72 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G13380 262 / 4e-72 BRL3 BRI1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003478 [exp] 902 / 0 AT1G74360 999 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003476 [exp] 510 / 3e-173 AT5G61190 42 / 3e-04 putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1) Lus10031689 [exp] 304 / 3e-87 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10031108 [exp] 300 / 8e-86 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2) Lus10038071 [exp] 274 / 5e-77 AT2G26330 1554 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 273 / 6e-76 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10009790 [exp] 270 / 2e-75 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020936 [exp] 260 / 2e-73 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 262 / 6e-73 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061600 [exp] 574 / 0 AT1G74360 1375 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G067600 [exp] 358 / 7e-109 AT1G74360 1014 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G132200 [exp] 326 / 2e-95 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.012G130400 [exp] 317 / 6e-92 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.008G140500 [exp] 306 / 2e-87 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 298 / 2e-84 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.006G220100 [exp] 282 / 1e-79 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G078100 [exp] 283 / 3e-79 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 281 / 1e-78 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G108200 [exp] 272 / 2e-76 AT4G08850 678 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015729 pacid=23167703 polypeptide=Lus10015729 locus=Lus10015729.g ID=Lus10015729.BGIv1.0 annot-version=v1.0 ATGCCAGAAGAAGAAGTTGATTCTTCCCCTGCCATTCTGTTCCTCTTCTCAATCATCCTCCTTCGAGTGAGTCTAGTCGCCGGAGATTCGCTGGAAGCAG ACAGAGACGCGCTTCTGAGCTTGAAATCCCATCTGATTAACCGGAACAGAGTGAATCCGGGGAGGTACTTGCAATGGGATCAACGCATCACTCCAAACCC TTGCAACTGGCTGGGAATTTACTGCTCTTCAGACGGGTCAAGAGTCACCGGAATCGACCTCGCTGATGACAACATCTCCGGGGAGCTGTACGGGAATTTC TCATCGCTGACAGCTCTGGAGTCTCTTGATCTCTCTCAAAATTCGCTTCTCGGTTCTCTTCCCGCTGATCTGAGCAACTGTCAGAGTCTGGCTTATCTGA ATCTTTCTCACAATATCCTACAGGGAGGAGTGAACTTCACCGGTTTGAGAAATTTACAGGTTGTTGACTTGGCCAAGAACAGATTCTCTGGCGGAATTCA GTTCAATTCCCCTGGAATGTGTGGAAACCTGGTTGTGGCAAATCTATCAGAGAATTCGTTCACCGGCAGGGTTGATCATAGCTTTGTTGGGTGCTCCAAC TTGCTGTATCTTGACTTGAGCTCGAACCACTTCATTGGCGGTTTGTGGAGTGGATTCTCTAAGCTTAGGGAGTTCTCCGCCTCTGAGAATGCGTTGAGTG ATATTTCCGGGTCAGTGTTCAACGAGAATTGCAGCTTACTATCCTTAGACATATCAGAGAACAATTTCACAGGTATATTGCCTGGAAATGTCTCGAATTG TAAGGATCTCACAAATCTGAATGTCGGAGGTAATCATTTCAGCGGCTTGATTCCGTCGGAGATAGGCTCGATTTCGGGTCTTGAAACGTTGTTTCTCGGT AACAATAGCTTCTCTTCTGCTATACCAGAAACTCTACTGAACTTGAACAACTTAACCCTTCTGGATTTGAGCAGAAACAATTTCGGTGGTGGGATACAAC CGATTTTCGGGAGGTTCACTCGAGCCAAGTTTCTGGTTTTGAGTGGCAATTCATACACAAGTGGACTGCATAGTTCAGGAATTCTGAACCTCACCGATCT CGTCGGACTAGACTTGAGCTATAATAACTTCTCAAGTTCGTTACCGGTCGAGTTGTCACGAATGCGAGGGTTGAAATTCCTGATCATGGCACACAATCAG TTCAATGGAAGCATACCTGAAGAATATGGCAAAAACTTGACAGACATTCAAGCTCTTGATCTATCCTTCAACAGACTCACAGGAAGCATTCCATCCTCTT TCGGAGATCTGAATTCCCTCCTATGGCTGATGCTGGCAAACAACGAGATAACCGGCCCGATCCCAAGCAAACTCGGGAAATGCAGCAGCTTACTGTGGCT GAACTTAGCTAACAACAGACTCTCAGGAACCATCCCATCAGAACTGATGAACATTGGGAGCAATCCCGAGCCGACGTTTCGAAAGAATCTTCTGGTTTTG GCAATTCTGGTATGCGGAGGTCTGTCCTTGATCATCCATGTATTGGGGAAAACTCCACAGGACTCGTATCTACTGCAAAAGAGTAACAAATTCGGACTCG ATTCCGCGACAACTTCCGGTAGCAGCTCGTCCGATACAGTGAAGATAATCCGTCTGGACAAAACGGCGTTTACTCACGCTGACGTTCTATCCGCGACGGA GAATTTCTCCGAGAGGAGGATCGTCGGGAGGGGAGGGTTTGGAACGGTTTACAGAGGAGTATTACCTAATGGAAGACAAGTGGCGGTGAAGAAGCTTCTC AGGGAAGGGATCGAAGGCGAGAAGGAGTTCCGAGCGGAGATGGAAGTACTGACGGGGAACGGCGGGCATCCGAATCTGGTAGCGCTCCACGGCTGGTGCC TCGACGGATGCCAGAGGATCTTGGTGTACGAATTCATGGAAGGAGGCGCGCTGGAGGATCTGGTGTCGGATTGGAGGAGGCTGACGTGGCGGCGGAGGGC GGAGATCGCGGTGGATGTGGCGAGGGCGTTGGTGTTCCTCCACCACGAGTGCTACCCGGCGGTGGTCCACCGCGACGTGAAGGCGAGCAATGTGTTGCTG GATCGGGAGGGGAGAGCTAGGGTTACGGATTTTGGATTGGCGAGAGGAAGAGAGTTGGTACCAGCGGTGGTTATGGGATCGGATGGAGCAGCGGAGATGA GTGAGCTGTTGAGGATAGGGGTGAGGTGTACGGCAGAGGCGCCGCAAGTGAGACCTAACATGAAGGAGGTACTGGGGATGTTGGTTAAGATGCTTTCCGG CAGCGGCAGCGGCTGCGACCTACCTCCGCCGCGAGGAAAGGGATGTACTGTTTTTTACCCATCTCTGGTGCCAAAGCTGAGCAGTTTTTCCCAGAGTTCT TCTTTCTCCTTGCTCATCCTTCCATGGTTAAAGTTTACAGAGGGAAGACATTTTGAGCCAAAGTTGGCAACTTGGCATCCATCCTTCAAGGATTATATTA GAACAATGGGGGATAATATGTTTGGAGAAGGAACAATACCAGTCCATATCGCCATCCATAGAGAGATGGAGTACAGAAGGAAACTTGCGCGGATGCAGCA GATACCTGAAGCTGAGTTTTGCAAGAATCTCAGGCCTTTTGTGGTTGAACCCCCAATGCAAGGTACAAGCCTTGGTTCACATCAAAGGCCAAGTTCAAAT GCAACTCCTCCATTACCAAAACTAAAAGGACCAAACCATGGCCTCAAATCTTCTCACCCTTCGATTTCAGCTTCCAGCCTTTGTCCCTGTGCTAACCGAA GTTCAGATATGAATCTCGTGCTCGCGAATCCATCAAGGCAACAGCAAGGTCCAACCAACCAGTTCGAGACATCACAGCCAGCTGTAGGACTTGGAGACGT TCAAAACCACAATGACTACACTTTCTGCAAGATCTGTCAGGTTCCTTGTGCAGGTTATGCCAACTTCATGCAACACATGGAAGGTAGAAAGCACAAGAAC AAACAACTGGAGAAGAACGCAGGGAAGATTCCAGATTCTGTCACGGGAGAGAGTCCACGAAGATGGTGCGGAATGTGCAAGATCTGGTGCATGAATGAGG AGTTATTCCAAGTCCATCTGGGAGGTAAGCCACACATGCTGAAGTTGGCAGTCGACAATAGGAGCAAGCAGATTGTAGTACATGGTGAACTGGGGAAGGT GAGCAATGGAGGAGGTGGTAGCACAGGGAATCAACAGGGACCACGTAGGTGCGATCTCTGCGATATATGGTGCACAGATAGGGTGTCATTGGAGCTGCAC AGGAAGGGGAAACGACACATTGCTCAACTCCATGAGAGCCAGAACAAGAAGGCAAGGTTCTGA
AA sequence Show only first row Show all	>Lus10015729 pacid=23167703 polypeptide=Lus10015729 locus=Lus10015729.g ID=Lus10015729.BGIv1.0 annot-version=v1.0 MPEEEVDSSPAILFLFSIILLRVSLVAGDSLEADRDALLSLKSHLINRNRVNPGRYLQWDQRITPNPCNWLGIYCSSDGSRVTGIDLADDNISGELYGNF SSLTALESLDLSQNSLLGSLPADLSNCQSLAYLNLSHNILQGGVNFTGLRNLQVVDLAKNRFSGGIQFNSPGMCGNLVVANLSENSFTGRVDHSFVGCSN LLYLDLSSNHFIGGLWSGFSKLREFSASENALSDISGSVFNENCSLLSLDISENNFTGILPGNVSNCKDLTNLNVGGNHFSGLIPSEIGSISGLETLFLG NNSFSSAIPETLLNLNNLTLLDLSRNNFGGGIQPIFGRFTRAKFLVLSGNSYTSGLHSSGILNLTDLVGLDLSYNNFSSSLPVELSRMRGLKFLIMAHNQ FNGSIPEEYGKNLTDIQALDLSFNRLTGSIPSSFGDLNSLLWLMLANNEITGPIPSKLGKCSSLLWLNLANNRLSGTIPSELMNIGSNPEPTFRKNLLVL AILVCGGLSLIIHVLGKTPQDSYLLQKSNKFGLDSATTSGSSSSDTVKIIRLDKTAFTHADVLSATENFSERRIVGRGGFGTVYRGVLPNGRQVAVKKLL REGIEGEKEFRAEMEVLTGNGGHPNLVALHGWCLDGCQRILVYEFMEGGALEDLVSDWRRLTWRRRAEIAVDVARALVFLHHECYPAVVHRDVKASNVLL DREGRARVTDFGLARGRELVPAVVMGSDGAAEMSELLRIGVRCTAEAPQVRPNMKEVLGMLVKMLSGSGSGCDLPPPRGKGCTVFYPSLVPKLSSFSQSS SFSLLILPWLKFTEGRHFEPKLATWHPSFKDYIRTMGDNMFGEGTIPVHIAIHREMEYRRKLARMQQIPEAEFCKNLRPFVVEPPMQGTSLGSHQRPSSN ATPPLPKLKGPNHGLKSSHPSISASSLCPCANRSSDMNLVLANPSRQQQGPTNQFETSQPAVGLGDVQNHNDYTFCKICQVPCAGYANFMQHMEGRKHKN KQLEKNAGKIPDSVTGESPRRWCGMCKIWCMNEELFQVHLGGKPHMLKLAVDNRSKQIVVHGELGKVSNGGGGSTGNQQGPRRCDLCDIWCTDRVSLELH RKGKRHIAQLHESQNKKARF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74360			Leucine-rich repeat protein ki...		Lus10015729 [exp]	0	1
AT1G65690			Late embryogenesis abundant (L...		Lus10007364 [exp]	3.5	0.9617
					Lus10005525 [exp]	4.7	0.9685
AT3G05170			Phosphoglycerate mutase family...		Lus10031518 [exp]	8.8	0.9558
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015208 [exp]	10.0	0.9531
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10025989 [exp]	14.7	0.9540
AT1G58420			Uncharacterised conserved prot...		Lus10012496 [exp]	15.5	0.9493
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10029896 [exp]	17.0	0.9599
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021288 [exp]	23.0	0.9575
					Lus10006567 [exp]	24.5	0.9573
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015209 [exp]	36.5	0.9367

Compare expression of checked genes

Lus10015729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.