Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25400 127 / 8e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003475 [exp] 191 / 9e-64 AT3G25400 164 / 3e-53 unknown protein Lus10020407 [exp] 126 / 3e-38 AT3G25400 178 / 1e-58 unknown protein Lus10009588 [exp] 124 / 4e-37 AT3G25400 177 / 5e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069700 [exp] 138 / 3e-43 AT3G25400 166 / 4e-54 unknown protein Potri.008G168700 [exp] 138 / 4e-43 AT3G25400 170 / 9e-56 unknown protein Potri.014G148200 [exp] 129 / 4e-39 AT3G25400 175 / 2e-57 unknown protein Potri.002G250000 [exp] 124 / 8e-38 AT3G25400 151 / 3e-48 unknown protein Potri.002G235000 [exp] 125 / 9e-38 AT3G25400 134 / 5e-41 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0231 [flax] [poplar] MazG PF03819 [flax] [poplar] MazG MazG nucleotide pyrophosphohydrolase domain
Representative CDS sequence Show only first row Show all	>Lus10015730 pacid=23167674 polypeptide=Lus10015730 locus=Lus10015730.g ID=Lus10015730.BGIv1.0 annot-version=v1.0 ATGGAGGTTGGCAGCAGCAAGAAGAAGGATGTTTCACTCCAAGAACTGAGGAACAAGGTACCAGAGTTTTCTGAAGCAAGAGGCTGGAATGAGTACCACA GTCCAAGAAACCTCCTTTTGGCCCTGGTGGGAGAAGTTGGGGAGCTGTCAGAGATATTCCAGTGGAAAGGGGAAGTAGGGAAAGGGCTTCCAAATTGGAG CTCAGATGATAAGGAGCACTTGGGGGAAGAGCTCTCTGATGTCCTGCTGTACCTCACCCGCCTTGCTGATATTTATGGACTTGATCTTGGCACTGCTACT CTCACCAAGATTGTCAAAAATACTATCAAGTACCCTACCATCCCCGAAATCACGAAGCAGTACCCGATACCTTCATCAACTTCATCCTCGTCCTCCTAG
AA sequence Show only first row Show all	>Lus10015730 pacid=23167674 polypeptide=Lus10015730 locus=Lus10015730.g ID=Lus10015730.BGIv1.0 annot-version=v1.0 MEVGSSKKKDVSLQELRNKVPEFSEARGWNEYHSPRNLLLALVGEVGELSEIFQWKGEVGKGLPNWSSDDKEHLGEELSDVLLYLTRLADIYGLDLGTAT LTKIVKNTIKYPTIPEITKQYPIPSSTSSSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25400			unknown protein		Lus10015730 [exp]	0	1
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10038374 [exp]	4.2	0.7568
AT5G51280			DEAD-box protein abstrakt, put...		Lus10012899 [exp]	11.1	0.7400
					Lus10001007 [exp]	13.0	0.7873
AT4G37810			unknown protein		Lus10019254 [exp]	16.1	0.7986
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10019772 [exp]	30.7	0.6978
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10041293 [exp]	41.7	0.7653
AT4G37810			unknown protein		Lus10011591 [exp]	50.0	0.7182
AT2G33580			Protein kinase superfamily pro...		Lus10000139 [exp]	52.2	0.6785
AT4G18220			Drug/metabolite transporter su...		Lus10042836 [exp]	58.2	0.7321
					Lus10006591 [exp]	67.8	0.7439

Compare expression of checked genes

Lus10015730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.