Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07800 592 / 0 Flavin-binding monooxygenase family protein (.1) AT5G61290 588 / 0 Flavin-binding monooxygenase family protein (.1) AT1G62620 382 / 3e-129 Flavin-binding monooxygenase family protein (.1) AT1G63370 382 / 5e-129 Flavin-binding monooxygenase family protein (.1) AT1G12200 360 / 2e-120 FMO flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) AT1G62600 343 / 5e-114 Flavin-binding monooxygenase family protein (.1) AT1G62560 342 / 3e-113 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) AT1G12160 332 / 3e-109 Flavin-binding monooxygenase family protein (.1) AT1G62580 330 / 3e-108 NOGC1 nitric oxide-dependent guanylate cyclase 1, Flavin-binding monooxygenase family protein (.1) AT1G12130 320 / 9e-105 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003474 [exp] 870 / 0 AT5G07800 623 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10024598 [exp] 359 / 5e-120 AT1G62620 587 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10024609 [exp] 256 / 7e-81 AT1G62560 444 / 1e-154 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) Lus10032247 [exp] 213 / 4e-65 AT1G12140 315 / 1e-105 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) Lus10023940 [exp] 82 / 3e-16 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1) Lus10032235 [exp] 68 / 6e-14 AT1G62600 117 / 2e-32 Flavin-binding monooxygenase family protein (.1) Lus10005178 [exp] 74 / 8e-14 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10038126 [exp] 69 / 3e-12 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 61 / 1e-09 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067500 [exp] 657 / 0 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.001G121100 [exp] 394 / 1e-133 AT1G62600 607 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.013G019900 [exp] 360 / 2e-120 AT1G62600 513 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.001G121000 [exp] 357 / 5e-119 AT1G12200 557 / 0.0 flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) Potri.018G115800 [exp] 72 / 2e-13 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.006G137600 [exp] 72 / 3e-13 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.009G143500 [exp] 66 / 3e-11 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 66 / 3e-11 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.005G250600 [exp] 62 / 6e-10 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.007G028200 [exp] 57 / 2e-08 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10015731 pacid=23167696 polypeptide=Lus10015731 locus=Lus10015731.g ID=Lus10015731.BGIv1.0 annot-version=v1.0 ATGTCGAGAAAGGTGGTTTGTGTGATCGGGGCAGGACCATCTGGGCTGGTGGCGGCTAGGGAGCTGAGGAAGGAAGGGCATAGGGTGGTGATGTTTGAGC AAAAGCATGATGTTGGTGGGCAATGGTTGTATGATCCAAACATAGAGAGGGAAGATCCATTGGGGAATACAAAGTTCTTGGGTGTTCATAGTAGCATCTA CACTTCGCTTAGGCTTCTGTCCCCGAGGGAGATCATGGGGTACACCGATTTCCCCTTCTTTGTGAAGGAAGGGAGGGACACGAGGAGGTTCCCTGGCCAC AAGGAGCTATGGCTTTACCTCAAGGATTTTAGTGCCCATTTTGGCTTGAGGGAGATGATTAGGTTCAACACTAGGGTTGAGTATGTGGGGATGTTGGATT ATCATGGGGAGTTTGGGAAAGAGATTAAATGGGTTGCGAAGAGTAGATCATTGCTCAAAACTAATGATAAAGGAGAAATTGAAGTTAGTGTTGACGAGAA TGCGATCAGAGTTGAGAGTAATTCACTTGTGCAAGAGGTTTATGATGCAGTGGTCGTAGCTAATGGTCATTATTCGTATCCTCGGTTGCCGTCTATAAAA GGAATGGATAAGTGGAAGAGGAAGCAAATGCACAGCCATGTTTACAGGGTCCCTGAGGCATTCAAAGACCATGTGGTAGTGGTGGTGGGGCATTCTTTCA GTGGACAAGACATAGCAATGGAGCTGGTAGGTGGAGTTGCAAAACACGTTTATATAAGTGCTAGATCCCAAAACAATCTTACTGAGGGCTTCTTCAAAGT CATTTCTAAATACGACAACCTTCACCTTCGACCTCAGATCGAGTCCCTTCAAGAAGATGGGAGGGTTCTGTTTGTGGACGGGTCTTGGGTGATTGCCGAC GCCATCTTATACTGCACAGGGTATAAGTATTCATTCCCGTTTCTTGACACCAAAGGAATAGTAAGTGTGGATGATAACAGAGTAGGTCCTCTGTATCACC ATACTTTCCCTCCTTCACTTTCACCTTCCCTCTCCTTTGTCGGCATTCCCAGAAAGGCAAGTCTTCAACTAGTGCAGATCATAGCCTTCCCTTTCTTTGA GTCGCAAGGGAAATGGATTGCCCAAGTTCTGAGTGGAAAGAGGAAATTGCCTTGCTGTCAGGACATGATGGACTCTGTTCATCAATTTTATCGTCAGAGG GAAGCTGATGGTGTTCCCAAGCACGACACCCATGACATTAGCCAGTTCGAGTATTGTGATAAGTATGCAGATCATGCCGATTGCCCGCATCTAGAAGAGT GGAGGAAGAAGTTGTGCGTTTTAGCATTGGAGAATTCTTATGCAAATTTGGAGACATATAGGGACTCATGGGATGATGAAGAACTCCTTGAAGAAGCTCT TCAGAGCCCTCATTTCACTCAGCCGCTTATTGATCAACCTGCTGCTGCTACTGTCACTTGA
AA sequence Show only first row Show all	>Lus10015731 pacid=23167696 polypeptide=Lus10015731 locus=Lus10015731.g ID=Lus10015731.BGIv1.0 annot-version=v1.0 MSRKVVCVIGAGPSGLVAARELRKEGHRVVMFEQKHDVGGQWLYDPNIEREDPLGNTKFLGVHSSIYTSLRLLSPREIMGYTDFPFFVKEGRDTRRFPGH KELWLYLKDFSAHFGLREMIRFNTRVEYVGMLDYHGEFGKEIKWVAKSRSLLKTNDKGEIEVSVDENAIRVESNSLVQEVYDAVVVANGHYSYPRLPSIK GMDKWKRKQMHSHVYRVPEAFKDHVVVVVGHSFSGQDIAMELVGGVAKHVYISARSQNNLTEGFFKVISKYDNLHLRPQIESLQEDGRVLFVDGSWVIAD AILYCTGYKYSFPFLDTKGIVSVDDNRVGPLYHHTFPPSLSPSLSFVGIPRKASLQLVQIIAFPFFESQGKWIAQVLSGKRKLPCCQDMMDSVHQFYRQR EADGVPKHDTHDISQFEYCDKYADHADCPHLEEWRKKLCVLALENSYANLETYRDSWDDEELLEEALQSPHFTQPLIDQPAAATVT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07800			Flavin-binding monooxygenase f...		Lus10015731 [exp]	0	1
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Lus10013057 [exp]	1.4	0.8760
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006474 [exp]	19.9	0.8315
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10025592 [exp]	20.4	0.8684
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10025642 [exp]	26.6	0.8671
AT1G26761			Arabinanase/levansucrase/inver...		Lus10036775 [exp]	27.7	0.8548
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10010639 [exp]	30.7	0.8653
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	34.1	0.8597
AT2G42220			Rhodanese/Cell cycle control p...		Lus10023820 [exp]	39.8	0.8550
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10027894 [exp]	45.3	0.8543
AT5G14910			Heavy metal transport/detoxifi...		Lus10014520 [exp]	49.4	0.8539

Compare expression of checked genes

Lus10015731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.