Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29270 260 / 6e-87 RING/U-box superfamily protein (.1.2) AT1G74370 243 / 2e-80 RING/U-box superfamily protein (.1) AT1G69330 236 / 1e-77 RING/U-box superfamily protein (.1) AT1G21651 52 / 3e-07 zinc ion binding (.1) AT1G21650 52 / 3e-07 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT5G13530 47 / 1e-05 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003473 [exp] 440 / 1e-157 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2) Lus10030699 [exp] 264 / 1e-88 AT3G29270 310 / 5e-107 RING/U-box superfamily protein (.1.2) Lus10005220 [exp] 258 / 7e-86 AT3G29270 317 / 3e-109 RING/U-box superfamily protein (.1.2) Lus10004666 [exp] 214 / 5e-69 AT1G69330 272 / 1e-91 RING/U-box superfamily protein (.1) Lus10026648 [exp] 221 / 1e-68 AT1G69330 275 / 2e-89 RING/U-box superfamily protein (.1) Lus10028560 [exp] 52 / 3e-07 AT1G21650 687 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10018865 [exp] 41 / 0.0008 AT1G21650 573 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10024135 [exp] 40 / 0.0008 AT5G13530 309 / 2e-96 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067200 [exp] 304 / 3e-104 AT3G29270 270 / 3e-91 RING/U-box superfamily protein (.1.2) Potri.017G090000 [exp] 295 / 1e-100 AT3G29270 281 / 2e-95 RING/U-box superfamily protein (.1.2) Potri.004G125400 [exp] 274 / 2e-92 AT3G29270 283 / 4e-96 RING/U-box superfamily protein (.1.2) Potri.010G161100 [exp] 219 / 5e-71 AT1G69330 263 / 5e-88 RING/U-box superfamily protein (.1) Potri.019G066500 [exp] 49 / 2e-06 AT1G21651 716 / 0.0 zinc ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015732 pacid=23167666 polypeptide=Lus10015732 locus=Lus10015732.g ID=Lus10015732.BGIv1.0 annot-version=v1.0 ATGTGGGGATTTGCTTCAAAAGCTGTTAGTAGATCCCGCAGCGGGTCAAATAAGAGTAGGAAAAACCCACATCGAGCGGCATCATCGGATGATGAGCCTT CTCTAAACAGCAGCAGAGAGGAAAGCTTGGAATGCCCAATCTGTTGGGAGTCTTTCAACGTTGTGGAAAATGTGCCTTACGTTCTATGGTGCGGTCACAC CCTTTGTAAGAACTGCATCCAAGGACTTCAACGAGCCGTTGTGAAACTTCCTACGCTACCGGTACAGCTTCCTTTCTTCATCACCTGTCCCTGGTGTAAT CTTCTCTCCTTGAGGTTGGTTTACAAAGGGAACATGAGGTTCCCTAGCAAGAACTACATTTTGCTCTGGATGGTTGAGAGCATCAATGGTGATAGGTCAA AGTTAAGCTCCTCCTCCATCCGTGGGAATAATAATCACCAGTCTGTTTGGTCTTCCAATAGAAATACTGACACGGGTAGTAGTAATCAGCTTATCCAACG TAGAAATAACAGAGACCGCCAATCTTCTTCCCAACCGGATGAAGAGCCGATCTTGGATGGTCCTCCACGGCCAGGTGTTATCTATGCTAATGCTCAGAGT CTCCATGGATCAATCCGTAAGTCGTTGGTGTTCTTTCTCCAGTTGACGGCTAAGTTTCCATTGATTGTGGTGTTTCTTCTCATTGTGTTGTATGCAATAC CAGCCAGTGCAGCTGTTCTGGCACTTTACATACTGATCACTGTCTTGTTTGCTCTTCCTTCTGTACTCATCCTATACTTTGCCTTCCCAAGTCTGGATTG GCTAGTTAGAGAAATCATCACTTGA
AA sequence Show only first row Show all	>Lus10015732 pacid=23167666 polypeptide=Lus10015732 locus=Lus10015732.g ID=Lus10015732.BGIv1.0 annot-version=v1.0 MWGFASKAVSRSRSGSNKSRKNPHRAASSDDEPSLNSSREESLECPICWESFNVVENVPYVLWCGHTLCKNCIQGLQRAVVKLPTLPVQLPFFITCPWCN LLSLRLVYKGNMRFPSKNYILLWMVESINGDRSKLSSSSIRGNNNHQSVWSSNRNTDTGSSNQLIQRRNNRDRQSSSQPDEEPILDGPPRPGVIYANAQS LHGSIRKSLVFFLQLTAKFPLIVVFLLIVLYAIPASAAVLALYILITVLFALPSVLILYFAFPSLDWLVREIIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29270			RING/U-box superfamily protein...		Lus10015732 [exp]	0	1
AT4G36850			PQ-loop repeat family protein ...		Lus10022491 [exp]	1.0	0.8561
AT2G46910			Plastid-lipid associated prote...		Lus10010277 [exp]	4.0	0.8554
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035122 [exp]	4.2	0.8133
AT1G72175			RING/U-box protein with domain...		Lus10009529 [exp]	6.6	0.8154
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10011165 [exp]	6.7	0.8209
AT5G64816			unknown protein		Lus10025266 [exp]	9.5	0.7773
AT4G35140			Transducin/WD40 repeat-like su...		Lus10023993 [exp]	10.2	0.7759
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	11.2	0.8062
AT1G56310			Polynucleotidyl transferase, r...		Lus10031404 [exp]	12.2	0.7618
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10040986 [exp]	14.7	0.7598

Compare expression of checked genes

Lus10015732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.