Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00050 96 / 1e-21 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G36930 89 / 2e-19 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20180 89 / 3e-19 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT1G09530 88 / 6e-19 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT5G67110 84 / 1e-18 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G24260 80 / 2e-16 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 78 / 5e-16 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 77 / 1e-15 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT2G46970 72 / 9e-14 bHLH PIL1, bHLH124 phytochrome interacting factor 3-like 1 (.1) AT4G28790 71 / 3e-13 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003471 [exp] 446 / 7e-157 AT4G00050 129 / 8e-34 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000208 [exp] 273 / 1e-91 AT4G00050 50 / 2e-07 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028175 [exp] 97 / 1e-21 AT4G00050 232 / 2e-71 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024811 [exp] 89 / 1e-19 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10022833 [exp] 90 / 3e-19 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10011899 [exp] 89 / 7e-19 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10029805 [exp] 88 / 1e-18 AT3G59060 163 / 7e-45 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) Lus10020727 [exp] 87 / 3e-18 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10018724 [exp] 78 / 1e-16 AT4G36930 126 / 2e-34 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G143300 [exp] 95 / 3e-21 AT4G00050 278 / 2e-89 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G066500 [exp] 95 / 4e-21 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G124400 [exp] 91 / 3e-20 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G025800 [exp] 90 / 4e-20 AT4G36930 148 / 1e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G001300 [exp] 89 / 7e-19 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G001800 [exp] 89 / 7e-19 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.002G252800 [exp] 88 / 7e-19 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.014G111400 [exp] 87 / 3e-18 AT2G46970 131 / 3e-33 phytochrome interacting factor 3-like 1 (.1) Potri.002G055400 [exp] 86 / 6e-18 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2) Potri.005G139700 [exp] 84 / 2e-17 AT4G36930 171 / 2e-49 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10015734 pacid=23167705 polypeptide=Lus10015734 locus=Lus10015734.g ID=Lus10015734.BGIv1.0 annot-version=v1.0 ATGGGGTGGGTTTGGGGCGGGTCGTGGATTAATTATGAAGTAGCAGAGCTAACATGGGAAAAGGGACAACCATCCTTGAATGGACTCGGGAGCAGCCTAC ACCCAAAACAAACATGGACCAGTACTAGACCCAATAACGACACTCTCGAATCCATTGTCCACCAAGCCGCTTCCCTTAAACCACCGACGTCGCCGCCGTC AAATCCGACCTCCGACTGCAAATGGCGGCCCGTGGCCGCCTCCTCTCGGAAACGCAGCAGGACAGAGTCAAACGTTGCAAACGACGGCAAAAGAATATGG GATTCCAATCGAAGTAATGATGACGAAAATGTTGTTGGTTATAGAGTCGGGAACGGTGGGGCAGGACGCGCTGCCGCTTCCAGCAGGGAAAGTGGCGGTA CGGTGATGCCGTGGCCACTTCCGGCCACGTTTCAGAATAAACCTGATGATTGTGATGATAACGAAGAAGAGGAAGAGAAGGAAAGCGGCAAAACAGAAAC AACAACTAGTGCAAGATCACTCTCGTCAATATTCAGCAGGAGAAGCAGAGCAAGTGACGTGCACAATCAATCTGAAAGGAGACGTAGAGACAGGATTAAT CAGAAGATGAAAGCACTCCAGAAGTTAGTCCCTAATGCAAACAAGACGGATAAAGCTTCGATGTTGGACGAGGTGATCGATTACTTGAGGCAACTACGAG CACAAGTTGAAATGATGAACAATATTAGAAGCATGAAACCCCCACAACCATCACAAATGATGATGATGGTCCCCAACATTGATCAAATGCCTCTCTTTGG TTTAGGAATGGGAATGAATCCATTAGCATCATCATCATCGTCGATTCACATGCGTCATCTTCTACCTCCATCAGCATTCATGACTAATACCACTCCTCCA TTTCTTCTTCATCACTCTACTGCAAATATGAACTACAACAATACTTGTAAGAGCAGTGGAGAAGCTAATTTGTCATCGTTGAATGCAGCACAGTCTTCCA TGGATGTAGAGCTTTACTTGAAGAACATGGCTGCAATGGATCAACAGCAGCAACAAGAAGTCCATAATCGTAGCACAAATGCGATCGGTGCTGCATCTCA CCATTCCAGCCATACTATTCAAAGGGACAAGTAA
AA sequence Show only first row Show all	>Lus10015734 pacid=23167705 polypeptide=Lus10015734 locus=Lus10015734.g ID=Lus10015734.BGIv1.0 annot-version=v1.0 MGWVWGGSWINYEVAELTWEKGQPSLNGLGSSLHPKQTWTSTRPNNDTLESIVHQAASLKPPTSPPSNPTSDCKWRPVAASSRKRSRTESNVANDGKRIW DSNRSNDDENVVGYRVGNGGAGRAAASSRESGGTVMPWPLPATFQNKPDDCDDNEEEEEKESGKTETTTSARSLSSIFSRRSRASDVHNQSERRRRDRIN QKMKALQKLVPNANKTDKASMLDEVIDYLRQLRAQVEMMNNIRSMKPPQPSQMMMMVPNIDQMPLFGLGMGMNPLASSSSSIHMRHLLPPSAFMTNTTPP FLLHHSTANMNYNNTCKSSGEANLSSLNAAQSSMDVELYLKNMAAMDQQQQQEVHNRSTNAIGAASHHSSHTIQRDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	0	1
					Lus10002317 [exp]	1.0	0.9928
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10000208 [exp]	1.4	0.9898
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	3.9	0.9838
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	4.0	0.9639
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10003471 [exp]	4.2	0.9618
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	5.3	0.9806
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10030709 [exp]	6.5	0.9716
					Lus10038295 [exp]	6.7	0.9778
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	7.3	0.9778
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10002496 [exp]	7.7	0.9347

Compare expression of checked genes

Lus10015734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.