Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47210 528 / 0 MYB myb-like transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003470 [exp] 786 / 0 AT2G47210 631 / 0.0 myb-like transcription factor family protein (.1) Lus10021650 [exp] 595 / 0 AT2G47210 552 / 0.0 myb-like transcription factor family protein (.1) Lus10034713 [exp] 123 / 6e-34 AT2G47210 86 / 9e-21 myb-like transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G117400 [exp] 613 / 0 AT2G47210 617 / 0.0 myb-like transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015735 pacid=23167715 polypeptide=Lus10015735 locus=Lus10015735.g ID=Lus10015735.BGIv1.0 annot-version=v1.0 ATGGACGCCAAGGACATCCTTGGATTGCCCAAGACGCCGCTCTCAGTACATCCAGAGAAGAAGTCCCAGCCCAAGAAAGATTCCCAGCGAAAACCCGATG GCATTTCCCGCGAGGTGTATGCTCTTACGGGAGGGCTAGCACCTTTAATGCCATCAATTGAATCGTCCTTCTTGAAGAAACCTCCTCCTTCTGACGAAAA GATCACTTGGCAATGGCTTCCTTTCACTAGTTCTGCCCGGAAGGATTCTCTGCAGCTTTATCATTGGACCAGAGTTGTGAATGGTGTTCCTCCAACAGGG GACTATTCCTTTGCCAAATATAATAAGTCTGCTGAGGTTATCAAATACACGGAGGAGGAATATGAGCAGCATTTGACCGATCCTACATGGACCAAGCAAG AGACAGATCAACTGTTTGACTTGTGTGAGCACTTTTCTCTTCGCTTTGTTATCATAGCAGACAGGTTTCCATCTTCTCGGACTGTGGAGGAATTGAAGGA TCGGTCCATATTGCTTGCTAGAGCTACATCTCCAGCTGATGTCTCAGGCCACCCGCTTGTTAAGGAAACCTATAATGTCTCCCAAGATAGAGACCGCAAG CGTGCTTTGTCCATGGTCCTTTCACAAACTAGGCAGCAAGAGAGAAAGGATACTGAGGTCGTTACTGAAGCGAAAAAGATAACTGAATCTCGGATGGCTG CAAGAGGTGCTGAGCCGTCTGTAATGCCTGTCGTGGAGATTGAAATGGCTGAAGCCACTGTTAATCACAATGATGGTATTGTGCCTCCACCCAATGTTCG ACTTACCCCTATTACAGATGCACCTTCAGCTTTAGTCATTGCAGACACCTCTTCTACTCTTGCCTCACTGCGCATGCTTCCTGTATACTTGAGGACTTAT GGACTTGAGCAAATGGTGCAACAAGCCAGTTCCATAGCAGGACTTCGTACTATTAAGCGAGTTGAACAAACTTTGCAAGATCTTGGGTTGCAATACAAGG AGGCAGAAGGTTCTTCGTTTCGTGAGGGTACCTATTCTGAAATGCCAGGCACACCAAAGCATGCAGTTCGTGACCATGATCGTACCTTCATAACTGATGT TCTAACTTTTGGAGGCGAAAGGGGTGGTAGAAAGGATCAGAAACGCAAGTTATACGTTAAGGGTCCTGGAAGGGTGTCTGACACACCATCATCACCAGCT AATAAGCGTCCAAGAAAAATGAAGGCTTCTGATCTCTAA
AA sequence Show only first row Show all	>Lus10015735 pacid=23167715 polypeptide=Lus10015735 locus=Lus10015735.g ID=Lus10015735.BGIv1.0 annot-version=v1.0 MDAKDILGLPKTPLSVHPEKKSQPKKDSQRKPDGISREVYALTGGLAPLMPSIESSFLKKPPPSDEKITWQWLPFTSSARKDSLQLYHWTRVVNGVPPTG DYSFAKYNKSAEVIKYTEEEYEQHLTDPTWTKQETDQLFDLCEHFSLRFVIIADRFPSSRTVEELKDRSILLARATSPADVSGHPLVKETYNVSQDRDRK RALSMVLSQTRQQERKDTEVVTEAKKITESRMAARGAEPSVMPVVEIEMAEATVNHNDGIVPPPNVRLTPITDAPSALVIADTSSTLASLRMLPVYLRTY GLEQMVQQASSIAGLRTIKRVEQTLQDLGLQYKEAEGSSFREGTYSEMPGTPKHAVRDHDRTFITDVLTFGGERGGRKDQKRKLYVKGPGRVSDTPSSPA NKRPRKMKASDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47210	MYB		myb-like transcription factor ...		Lus10015735 [exp]	0	1
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	4.5	0.9289
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10024826 [exp]	5.5	0.9066
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10026558 [exp]	5.7	0.9014
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	6.7	0.9171
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10029994 [exp]	9.5	0.8749
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10005782 [exp]	12.0	0.8881
AT5G43100			Eukaryotic aspartyl protease f...		Lus10019309 [exp]	12.3	0.8714
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	13.9	0.9187
AT3G13690			Protein kinase protein with ad...		Lus10018944 [exp]	16.1	0.8547
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	16.1	0.8961

Compare expression of checked genes

Lus10015735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.