Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07810 259 / 4e-76 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003469 [exp] 593 / 0 AT5G07810 1276 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067000 [exp] 286 / 2e-85 AT5G07810 1185 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0263 [flax] [poplar] His-Me_finger PF01844 [flax] [poplar] HNH HNH endonuclease
Representative CDS sequence Show only first row Show all	>Lus10015736 pacid=23167691 polypeptide=Lus10015736 locus=Lus10015736.g ID=Lus10015736.BGIv1.0 annot-version=v1.0 ATGAACGTTATATCTTCTGTGCAAAGGTGCAGGTTTCTTGTCTCTTCGGTTAGCTCTTGTACTGATGTTTTGATTTCGTATGATGTGATAAGTGATGGTT TATTAGAAATGGAGGTTGAGATCGAGGGAGAGAATGGAAGGAGGGAGAAGCAGGAAGAAGAAGAGGATAAGCTCTGGAAACGTGAAATGATTCATTTCAC CCTCATCTCTGTTTTATCCTTACAAGCTTATTACCATTTTACTGTAGTAACAGCTTCAACGAATGGACTGAACATTGAAATATACATTCATTACAGAACA GTACGGTTCTTGATCAAGAAATGGGAGAAGATTCAATCCCAAGTGAATTTAGAGACCAGTCACTGTAAACCCGAAGCTAGGAGTCAGAGCACAGCCTGTT CTCCTGACTTGAATGAGCTGAGTGTATTGAAGGATCAGCTGATGATGGGAACAGAGAGTTGTTCTCAAAGACCAGTGCCAGATTATGACACTTCTATTCA GAAAAATGGAAGCGGCAGTTGTGACTCTAACATGATACGCTATTTACGTTTTGAGGTAAGTCAATACACTGGAAGGGTTCACCTTTATCCCTGCAGACCT GGTATCGACTCTAGACCACAGCCCCTGTCTGAAAGCTTCAGACCGGAAGAACTTGAGCCACTTGAGCCTCCTACCCCAAGTGACAAAGAAGCATCTTCTG AATCCTTGGAGGGAAAACCAGATTATAGACAAGCTGTTCGTATATTCATTGACGAGTGGAATAAGCTGCGGCCCATTGAGCGGAGGAAATTATTTGGAAA AACTTTACAGCTTCCTCTTGCAGTTGAATTGTGCTACTTGAATGAAACTTTGAACTCTAACCCAATGGGACTGCTGAAAGGTCAAAGCAAACGTCGGAAG ACTCCAATTTTGGAGATTAGCCATCCATTGCCATCTGATGCTTCTTGGAAAGTTGTATATTTGTCTAGAGGCCGTGTTAAAAAGGAGAGAAAGTACACTC AGGGTTGGACGCTATCAGATGAGCCGCTCTGCAAACTTTGTCAATCACCTTGCAAAAAAGAGTATGTGAAGAAAGTAGCTCCAAAGGTTGCTTCTCGCAA AAAATTGCTTGAGAAGCTTGTGAACTATCCAGCTGAAGGAAATGCATGGCATGCAGACCACATAGTTCCTGTCTATAATGGAGGTGAGTGCAGACTAGAG AACATGAGGACTCGCTGTGTGGCTTGCCACTACGATGTAACAGCTGCTCAAGGTGCGGACAGACGTTTGGCTAGAGCAAGGACTCGGAAGCAGCTTAAAG CGGCCATGCTTGAGCTTGAACAGGACCAGAATTCGGAGAAGTCCGACAGAAGTTCCAAGCGCCTACTAGCGAGCACAGAAACAAGCCTCGGAAGCCACGA CAATGATGATGACAAGCCGCCATCCAATGCCGAAAAATCAACTCAAAACGGAGCATCTGCCTCGGATACAATTCAGTGTCCTGCATCAACAGAGTAA
AA sequence Show only first row Show all	>Lus10015736 pacid=23167691 polypeptide=Lus10015736 locus=Lus10015736.g ID=Lus10015736.BGIv1.0 annot-version=v1.0 MNVISSVQRCRFLVSSVSSCTDVLISYDVISDGLLEMEVEIEGENGRREKQEEEEDKLWKREMIHFTLISVLSLQAYYHFTVVTASTNGLNIEIYIHYRT VRFLIKKWEKIQSQVNLETSHCKPEARSQSTACSPDLNELSVLKDQLMMGTESCSQRPVPDYDTSIQKNGSGSCDSNMIRYLRFEVSQYTGRVHLYPCRP GIDSRPQPLSESFRPEELEPLEPPTPSDKEASSESLEGKPDYRQAVRIFIDEWNKLRPIERRKLFGKTLQLPLAVELCYLNETLNSNPMGLLKGQSKRRK TPILEISHPLPSDASWKVVYLSRGRVKKERKYTQGWTLSDEPLCKLCQSPCKKEYVKKVAPKVASRKKLLEKLVNYPAEGNAWHADHIVPVYNGGECRLE NMRTRCVACHYDVTAAQGADRRLARARTRKQLKAAMLELEQDQNSEKSDRSSKRLLASTETSLGSHDNDDDKPPSNAEKSTQNGASASDTIQCPASTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07810			SNF2 domain-containing protein...		Lus10015736 [exp]	0	1
AT5G46230			Protein of unknown function, D...		Lus10000355 [exp]	6.2	0.9005
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Lus10006750 [exp]	12.5	0.8699
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10029016 [exp]	14.6	0.8705
AT4G32090			Beta-1,3-N-Acetylglucosaminylt...		Lus10012177 [exp]	15.1	0.8679
					Lus10009439 [exp]	21.7	0.8656
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	25.6	0.8633
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Lus10033477 [exp]	27.0	0.8553
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	28.5	0.8587
AT1G08350			Endomembrane protein 70 protei...		Lus10020613 [exp]	30.3	0.8527
AT3G47570			Leucine-rich repeat protein ki...		Lus10035724 [exp]	33.5	0.8539

Compare expression of checked genes

Lus10015736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.