Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61210 350 / 3e-121 SNP33, ATSNAP33B, SNAP33 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) AT1G13890 263 / 9e-88 ATSNAP30, SNAP30 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) AT5G07880 229 / 9e-75 ATSNAP29, SNAP29 ARABIDOPSIS THALIANA SYNAPTOSOMAL-ASSOCIATED PROTEIN SNAP25-LIKE 29, synaptosomal-associated protein SNAP25-like 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003466 [exp] 548 / 0 AT5G61210 379 / 1e-132 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10034705 [exp] 464 / 2e-166 AT5G61210 350 / 1e-121 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10004660 [exp] 259 / 4e-86 AT1G13890 349 / 4e-122 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10036893 [exp] 256 / 2e-84 AT1G13890 335 / 2e-116 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10037092 [exp] 255 / 3e-84 AT1G13890 327 / 1e-113 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10026653 [exp] 182 / 5e-57 AT1G13890 220 / 1e-72 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049000 [exp] 392 / 7e-138 AT5G61210 403 / 3e-142 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.012G066700 [exp] 347 / 6e-120 AT5G61210 360 / 3e-125 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.008G093800 [exp] 284 / 9e-96 AT1G13890 337 / 4e-117 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Potri.010G160350 [exp] 243 / 1e-79 AT1G13890 266 / 2e-89 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10015738 pacid=23167635 polypeptide=Lus10015738 locus=Lus10015738.g ID=Lus10015738.BGIv1.0 annot-version=v1.0 ATGTTTGGCTTGACAAAATCTCCCTTAAGGATTCCTAAGCATAACAAGGTTGACCAGCAACATGCGGCTCCTTCAAACAGCAATCCGTTTGATTCCGATG ATGAGTTGCATAGCAAGGAAACCACCATGAAACTCTCCAAGAGATCTGCTTCAGAGCCAGACCTAGCTACACCAGGCTCTTCCACCAATCCATTTGATGA TTTTGAGGACAAGGGAGCATCTTCATCGTCCTCTTCGCATTCCCGCATTTCGAATGCAAGGAACAAGTATAAGAATGATTTCCGGGACTCGGGAGGAATT GAGAACCAATCAGTGCAAGAGTTGGAGGACTATGCTGTTTATAAGGCTGAGGAGACCACAAAGGCAGTCAATGGTTGTCTCAAGATTGCTGAGGATATCA GAGAAGATGCTTCCAAAACTCTAATCACCTTGCATCACCAGGGCGAGCAAATTACCAGGTCGCACAATGTCGCTGTTGAGCTGGACAATGATCTTTCTAG GGGTGAAAGACTTTTAGGATCTCTTGGTGGGATGTTCTCCAAAACTTGGAAACCAAAGAAGACTCGTCCGGTTGCCGGCCCTGTGATTACCAAAGATGAT GCTCAAAGGAGAGGTAACCATCTACAGCAGAGGGAAAAGTTGGGTCTGGATACTGCATCCAAGGGGGTGTCTACTAACGCACGAACACTCCCTACAGAAC CAACTGATGCTTACCAGAAAGTAGAGGTTGAGAAGGCCAAGCAAGATGATGCTTTTTCGGATTTGAGTAACCTTTTAGGGGAGCTGAAAGATATGGCTGT GGATATGGGAACTGAAATAGACAAGCAAACCAAGGCTCTGGATCATTACCAGGATGATGTGGATGTGCTAGATATCCGTATGAGTGGAGCCAACCAACGC ACTCGGCGTTTGCTAGGGAAGTAG
AA sequence Show only first row Show all	>Lus10015738 pacid=23167635 polypeptide=Lus10015738 locus=Lus10015738.g ID=Lus10015738.BGIv1.0 annot-version=v1.0 MFGLTKSPLRIPKHNKVDQQHAAPSNSNPFDSDDELHSKETTMKLSKRSASEPDLATPGSSTNPFDDFEDKGASSSSSSHSRISNARNKYKNDFRDSGGI ENQSVQELEDYAVYKAEETTKAVNGCLKIAEDIREDASKTLITLHHQGEQITRSHNVAVELDNDLSRGERLLGSLGGMFSKTWKPKKTRPVAGPVITKDD AQRRGNHLQQREKLGLDTASKGVSTNARTLPTEPTDAYQKVEVEKAKQDDAFSDLSNLLGELKDMAVDMGTEIDKQTKALDHYQDDVDVLDIRMSGANQR TRRLLGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10015738 [exp]	0	1
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10023629 [exp]	1.0	0.9772
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10041914 [exp]	1.4	0.9693
AT4G28400			Protein phosphatase 2C family ...		Lus10040565 [exp]	1.7	0.9607
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10003466 [exp]	2.8	0.9567
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10018810 [exp]	4.0	0.9191
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10036715 [exp]	4.2	0.9138
AT5G48290			Heavy metal transport/detoxifi...		Lus10016061 [exp]	5.9	0.9316
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10022005 [exp]	6.0	0.9233
AT1G75860			unknown protein		Lus10034539 [exp]	6.2	0.9111
AT4G28400			Protein phosphatase 2C family ...		Lus10028094 [exp]	6.5	0.9210

Compare expression of checked genes

Lus10015738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.