Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27270 483 / 2e-160 EMB976 EMBRYO DEFECTIVE 976, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74750 112 / 5e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 109 / 5e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT4G31850 103 / 5e-23 PGR3 proton gradient regulation 3 (.1) AT5G42310 96 / 1e-20 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G22470 94 / 4e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 93 / 6e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04760 92 / 1e-19 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12700 92 / 2e-19 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G62670 91 / 5e-19 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003465 [exp] 687 / 0 AT5G27270 665 / 0.0 EMBRYO DEFECTIVE 976, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 104 / 2e-23 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033110 [exp] 103 / 5e-23 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10018318 [exp] 103 / 6e-23 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017134 [exp] 98 / 3e-21 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003424 [exp] 97 / 8e-21 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10015397 [exp] 95 / 2e-20 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 95 / 4e-20 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 94 / 7e-20 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049400 [exp] 496 / 4e-165 AT5G27270 1179 / 0.0 EMBRYO DEFECTIVE 976, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 105 / 7e-24 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G066400 [exp] 103 / 4e-23 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.018G038300 [exp] 101 / 2e-22 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.012G123600 [exp] 101 / 2e-22 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G034400 [exp] 94 / 3e-20 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 93 / 1e-19 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G047000 [exp] 92 / 1e-19 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G019000 [exp] 92 / 1e-19 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G166200 [exp] 92 / 2e-19 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015739 pacid=23167637 polypeptide=Lus10015739 locus=Lus10015739.g ID=Lus10015739.BGIv1.0 annot-version=v1.0 ATGGCGATTCACGTTTCCCTACTCTTCCTCAACTCCTCTCTTCTCCTTCTTCCTCCACTTCCCAACCCAAGCTCCAGCTCCAAAACGCAAACAAAACCTT CCTCCACCTCCACCACCACCAGATTCTTATCCACAACCATCAAAGCCTCAGTTCATCAAGAGCCCTGGTCCTTAAGCGACGGCAACATTTCAAAACCCCA TAATAACCCCAAAACCCCTCCCTCCGACGCCGTCGCACGCCGCATCATCAACGAAAGAGCTCGCCACTTGAGCCAGCTGCGTAGGAGCCAGGGCTCTCAC GCACTGACTCCTCGATGGATCAAGCGAACTCCCGAACAGATGGTTCAGTACCTCTCCGACGACCGCAGGGGCCATCTCTACGGCAAGCACGTCGCCGCCG CCATCAAAACCGTCAGAGGCCTGGCCGGGACGAGGGGCGCCGATCGCAATATCAGGTCTCTCATGGCCGGATTCGTCGGCAAGCTCAGCTTCCAGGAGAT GTGCGTCGTTCTCAAAGAGCAGAAAGGCTGGAGAGAAGTTCGCGATTTCTTCGCTTGGATGCAACTCCAGTTGAGCTATCGTCCGAGTGTTGTAGTCTAC ACTATCGTTCTGCGGATATACGGACAAGTAGGGAAAATCAAGCTGGCAGAGGAGACCTTTCTGGAAATGCTGGAGGCTGGATGTGAGCCAGATGAAGTTG CTTGCGGCACAATGCTGTGTTCGTACGCCAGATGGGGGAACCACAAGTCGATGTTCTCGTTCTACGAGGCGCTCGAAGGACGAGGGATTAGGCTCCCCAT TACTGTTTACAACTTCATGCTGTCCTCGTTGCAGAAGAAGTCTCTTCATGAGAGTGTCATTCATCTGTGGAAGGATATGGTTAGTCAGCGTGTGCTTCCT ACTGCTTTCACCTTTACCCTTGTTATTAGCTCTCTAGTTAAGGATGGCCATCATGAGGAGGCATTCGCAGTTTTCGTCGAAATGAAGAATCAGGGGCATT TGCCTGACGAAGCTACTTATAGCTTGCTTATTAGTGCAAGCACTAGAAGAAGCAATTGGGATGAAGCTTTGGAATTATATGACGACATGAGGTCTAGTGG GCACTTTCCCAGTAAATTCACATGTGAATCACTGTTTGTTGAGCAGCGAGAAAACGTACTTGGGTATGGCACAAGTGCATCTCAGTTTCCGACATACCGA GAGAGCTCTGAGCATTGTAGAAGAGATGAAGTCGAGGAACATTTGGGTATCCAGTGCTACGTTAGGAAAGGGGATGTGGATGCTGCAGAGGATGCTTTTC GAGCTTTATCGATGACTGGATTACCTGATGCCCGTTCTTGTAATGACATGTTGAGTCTCTATACAAGACTTGGCTTCACTCAAAAGGCTAGAGATTTTGT TTTTCGGTTGAGGAAAGATCAGTTTGTGTTTGATGAGGAGATGACCAAAAGAGTCGGTAAATTGTTTGGTGATATGGCTATGCCGTGTGATGCTAAACAA ATTGATGGAGGAGATCAAAAGGGTAAGAAGATAGGAAATACTTAA
AA sequence Show only first row Show all	>Lus10015739 pacid=23167637 polypeptide=Lus10015739 locus=Lus10015739.g ID=Lus10015739.BGIv1.0 annot-version=v1.0 MAIHVSLLFLNSSLLLLPPLPNPSSSSKTQTKPSSTSTTTRFLSTTIKASVHQEPWSLSDGNISKPHNNPKTPPSDAVARRIINERARHLSQLRRSQGSH ALTPRWIKRTPEQMVQYLSDDRRGHLYGKHVAAAIKTVRGLAGTRGADRNIRSLMAGFVGKLSFQEMCVVLKEQKGWREVRDFFAWMQLQLSYRPSVVVY TIVLRIYGQVGKIKLAEETFLEMLEAGCEPDEVACGTMLCSYARWGNHKSMFSFYEALEGRGIRLPITVYNFMLSSLQKKSLHESVIHLWKDMVSQRVLP TAFTFTLVISSLVKDGHHEEAFAVFVEMKNQGHLPDEATYSLLISASTRRSNWDEALELYDDMRSSGHFPSKFTCESLFVEQRENVLGYGTSASQFPTYR ESSEHCRRDEVEEHLGIQCYVRKGDVDAAEDAFRALSMTGLPDARSCNDMLSLYTRLGFTQKARDFVFRLRKDQFVFDEEMTKRVGKLFGDMAMPCDAKQ IDGGDQKGKKIGNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10015739 [exp]	0	1
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10030949 [exp]	2.0	0.9002
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10015504 [exp]	4.2	0.8858
AT5G19540			unknown protein		Lus10034912 [exp]	6.7	0.8821
AT5G10530			Concanavalin A-like lectin pro...		Lus10007076 [exp]	8.4	0.8634
AT5G10530			Concanavalin A-like lectin pro...		Lus10007075 [exp]	9.2	0.8556
AT5G39980			Tetratricopeptide repeat (TPR)...		Lus10041429 [exp]	9.5	0.8685
AT1G04780			Ankyrin repeat family protein ...		Lus10011743 [exp]	9.5	0.8659
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10017640 [exp]	12.1	0.8249
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	13.3	0.8803
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10026548 [exp]	18.2	0.8221

Compare expression of checked genes

Lus10015739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.