Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45120 102 / 2e-24 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 100 / 5e-24 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G28200 83 / 7e-18 C2H2ZnF C2H2-type zinc finger family protein (.1) AT1G02030 80 / 9e-17 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G03510 78 / 5e-16 C2H2ZnF C2H2-type zinc finger family protein (.1) AT4G35280 76 / 3e-15 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT1G02040 76 / 4e-15 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G17180 75 / 4e-15 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT5G04390 74 / 1e-14 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G19580 74 / 1e-14 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003463 [exp] 474 / 3e-168 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 165 / 2e-46 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 153 / 7e-42 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1) Lus10042872 [exp] 88 / 8e-19 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10021409 [exp] 82 / 8e-18 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10024763 [exp] 85 / 1e-17 AT1G02030 122 / 9e-31 C2H2-like zinc finger protein (.1) Lus10009775 [exp] 84 / 2e-17 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10028173 [exp] 84 / 2e-17 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 81 / 2e-17 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G143800 [exp] 102 / 3e-24 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 95 / 1e-21 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.003G077200 [exp] 94 / 2e-21 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 94 / 3e-21 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.014G066200 [exp] 87 / 1e-18 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.002G143600 [exp] 87 / 2e-18 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.001G125900 [exp] 82 / 3e-17 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.010G229400 [exp] 78 / 4e-16 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.017G091800 [exp] 80 / 5e-16 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1) Potri.008G032300 [exp] 78 / 6e-16 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015740 pacid=23167654 polypeptide=Lus10015740 locus=Lus10015740.g ID=Lus10015740.BGIv1.0 annot-version=v1.0 ATGGAAGAAGATCACCATGATCACGAGGAAGAGGTGGTGATGAGGTGGAAACATGTGTGCAAATTCTGCAGGAAGAGGTTCCAAAGTGGGAGATCACTGG GAGGGCACATGAGGTCTCACATGGTTGATGATGTTTCGGCTCTAACTGATGGCACTCTCATCACCAGAAAGAAGCTCCCTTCTCTCCCTCACCTTACAGA AGCTGCAAAGTCTGCATCTTTATCAGTTGGCAGTAAGAATAACATCAACAATGGCGGAGGAGGAGGAGGAGGATCATGTTCTGGGACATCAGGGAATGAA GATCAGCAAGAACAAGAAGAGGTAGCTATGTGCCTTATGCTGCTTTCCAGGGATATTGTTCATGTTACTGATGAGTCTTATTCTGGCAAAAGTACCTCTG ATTGCTTGGAACTTACTGTTTCTGAGAATACAAGAAAGGGTGGTGATGGTTCCTGTAGTGATGGATTATCACAAGAGACTGAATCTGAAACTAGTGATAG TAAGAGGAAGAGGAAGTTGGGGGATGATGATGATGCTGTTTTGAATTCAGTAAATAACAGCAGCATCAAGTTTGAGTGTGAAGCTTGCAACAAGAAATTT CATTCATACCAAGCATTGGGAGGCCATAAAGCCAGCCACAAGAAGATCAAAGGCTGTTCATTTAACAGCAATGAAGAAGAAGAAACTCATGATGGAAGCA AGCTGATCATGATGAAATCAATGAAGCATGAGATTCTTTCCAACAACAACAACATCAAGTCCATTACTACTACTGTTGCTGCCACTGAGAAGAAAAAGAA GAAGAGTAGTAGTGAGAGAGTACATGAATGTCCAATTTGTTTCAAAGTGTTTACAACAGGACAGGCACTTGGTGGCCACAAGAGATCTCATTTGCTTGTT GGAACTAGTGCTAGTGTTTCTGCAGAAGAAGAAGAAATTCCAGACATTAAGAATTTCATGGTGGATCTCAATCTTCCTGCTCAAGTGGATGAAGATAGCA TCATCATCAGCAATAGCAACATCAACAGGAACCTTAATGATGCTGTGTTTGAAAATCCATGGTGGACAGGAAGCAAGCATGAACAACAACTTGTTGTGAC CATTAATCTCTGA
AA sequence Show only first row Show all	>Lus10015740 pacid=23167654 polypeptide=Lus10015740 locus=Lus10015740.g ID=Lus10015740.BGIv1.0 annot-version=v1.0 MEEDHHDHEEEVVMRWKHVCKFCRKRFQSGRSLGGHMRSHMVDDVSALTDGTLITRKKLPSLPHLTEAAKSASLSVGSKNNINNGGGGGGGSCSGTSGNE DQQEQEEVAMCLMLLSRDIVHVTDESYSGKSTSDCLELTVSENTRKGGDGSCSDGLSQETESETSDSKRKRKLGDDDDAVLNSVNNSSIKFECEACNKKF HSYQALGGHKASHKKIKGCSFNSNEEEETHDGSKLIMMKSMKHEILSNNNNIKSITTTVAATEKKKKKSSSERVHECPICFKVFTTGQALGGHKRSHLLV GTSASVSAEEEEIPDIKNFMVDLNLPAQVDEDSIIISNSNINRNLNDAVFENPWWTGSKHEQQLVVTINL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015740 [exp]	0	1
AT1G13900			Purple acid phosphatases super...		Lus10004661 [exp]	4.9	0.9398
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10042185 [exp]	7.9	0.9088
AT3G59310			Eukaryotic protein of unknown ...		Lus10026744 [exp]	11.2	0.9306
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10029454 [exp]	14.8	0.8944
AT1G47530			MATE efflux family protein (.1...		Lus10042343 [exp]	15.3	0.9321
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10012578 [exp]	16.4	0.8958
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10003463 [exp]	21.9	0.9106
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10003159 [exp]	22.1	0.8713
AT1G11655			unknown protein		Lus10020050 [exp]	23.7	0.9270
AT5G39785			Protein of unknown function (D...		Lus10037176 [exp]	24.3	0.9149

Compare expression of checked genes

Lus10015740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.