Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62470 690 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 687 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 685 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G73400 249 / 3e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 237 / 2e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 237 / 2e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G26500 228 / 4e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 231 / 7e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 215 / 3e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 213 / 6e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003461 [exp] 1097 / 0 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019141 [exp] 277 / 1e-84 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034419 [exp] 276 / 3e-84 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 247 / 1e-73 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001588 [exp] 224 / 2e-64 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021991 [exp] 222 / 8e-64 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011566 [exp] 216 / 3e-61 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 207 / 3e-59 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 202 / 3e-57 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121400 [exp] 732 / 0 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G191200 [exp] 365 / 1e-122 AT3G62470 382 / 3e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098600 [exp] 265 / 1e-80 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 243 / 3e-72 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 234 / 2e-69 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 232 / 4e-67 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 212 / 4e-61 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G086100 [exp] 207 / 2e-59 AT1G26500 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 207 / 1e-58 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G115500 [exp] 204 / 8e-58 AT3G15200 546 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015741 pacid=23167621 polypeptide=Lus10015741 locus=Lus10015741.g ID=Lus10015741.BGIv1.0 annot-version=v1.0 ATGGTTCTCTCCACTCTAAATCGTCGCAAATTGCTCTACCAGCTTTGGAGCTCATCGAGAAATCACTCTGATTGCCATGGACAACAACTCCGCTCAACCT CCAAGCTACTCGATGTGGATCTCCGACAAAGAGAACACGGAGGAGCGCCACGAAAACGGCTCCGGTGGGGAGAGCAAATCCGGGTGGCTCGTGGTAGCTC TCTGCCCTTGTCTTGTTCTCTTTACTCTCCTCCTAATCATCGTCTCCATAGTTCTAGCAGTCAAATTCCGCATCTTCTGCCACACCCCTCTCGGCTCTCT CATCTACAAAAACCACTGCCACCACTAGTTCCGCGGGAAGTCTCCCAATCGATTAGCAGACGGTACTGTAGCGGCGATTCCGTTAAGGATTCCGTCTCCG ATTCAGACGGTGAATTTTCGGGCAGTGATGCCAAGGAAGAAAGGAGAAATGGCGGTGCAGCAGATCCAGCGGAGGTAGATAAGGTATGCAAGGTGATCGA CGAATTGTTTTTGCTAGACCGTAACATGGAAGCAGTTCTTGACGAATGTAGGATCAACTTGTCACATGACTTGGTTGTGGATGTGCTGGAGAGGTATCGC CATGCTAGGAAACCGGCGATGCGGTTCTTTTACTGGGCCGGGCAGAGGCCGGGTTTCAGCCATGACTCGAGGACTTGTAATGCGATGATGAGTATCCTGG CGAAGACTCGGCAGTTGGAGACGATGGTGTCAATGCTTGAAGACATGGGGGAGAAAGGTCTTTTGACAATGGATACGTTTCTGATTGCTATGAGAGCCTT TGCTGCTGCCAAGGAGAGGAAAAAGGCTGTGGGGATGTTTGAGTTGATGAAGAAGTATAGATTCAAATTGGGTGCAGAGACGTTGAATTCTTTGCTGGAT AGTCTCGGCAGGGCCAAGCTTGCTAAAGAGGCTAAAGTTCTGTTTGGGAGGCTTGAACATAGGTTTACTCCGAATCTGAGGACATATACGGTTTTGCTTA ATGGTTGGTGCAAGGTGAAGAATTTGATGGAGGCTGGGAGAGTGTGGAACGAGATGATTGAGAAAGGGTTTAAGCCGGATGTTGTTGCCCACAATATCAT GCTTGAAGGGTTGTTGAAGAGTAGGAAGAGATCTGATGCTATCAAGTTGTTCGAGATCATGAAGGCTAAAGGCCCGACCCCTGATGTCCGGAGCTACACG ATTCTGATACGGTATTTGTGCAAACAGAGTAGGATGGAAGAGGCGATCGACTATTTCGACGAGATGGTTGATTCAGGATGCGAGCCTGATGCTGTGATTT ATACATGTTTGATCTCTGGGTTTGGGAACCAGAGGAAGATGGACACGGTTTTCGAATTGTTGCAAGAGATGAAAGAAAAGGGATGCCCGCCGGATGCGCA GACCTACAATGCCCTTATTAAGCTGATGGTCCGGAGAAGGCTTCCTGATGATGCTGTGAAGGTGTACAAGAAGATGATTCAGAACGGAATGGAACCCACG ATTCATTCGTATAACATGATTATGAAATCCTACTTTTACATCAGAAACTATGAAATGGGCCTTGCTGTTTGGGATGAGATGCTTAGTAGGGGTTGTTGCC CTGATGATAACTCGTATACTGTACTGATACGAGGGTTGGTAAGTCAGGGGAGATCGGGAGATGCTTGTAAGTACTTAGAAGAAATGATGGAGAAAGGAAT GAAAATGCCTCAGCTAGACTATAACAAGTTTGTAGCTGACATATCTAAGGCTGGCACTCCCGCTGCATTTGAAGCTTTAGCCCAGAGATTAAACTTGGTG GGGAATTTCGGGGCGGCCAGTGGCTTGGCGAGAAAGTCTGAAGCAATGAATAACAGAAACAATAGACATGGGCGGGCTACTGAGAGAACATCATCCATGG GGGTTCCAGAGGAACATGAGTATTCTTATTACAGCCCCTCGGGTGGATGA
AA sequence Show only first row Show all	>Lus10015741 pacid=23167621 polypeptide=Lus10015741 locus=Lus10015741.g ID=Lus10015741.BGIv1.0 annot-version=v1.0 MVLSTLNRRKLLYQLWSSSRNHSDCHGQQLRSTSKLLDVDLRQREHGGAPRKRLRWGEQIRVARGSSLPLSCSLYSPPNHRLHSSSSQIPHLLPHPSRLS HLQKPLPPLVPREVSQSISRRYCSGDSVKDSVSDSDGEFSGSDAKEERRNGGAADPAEVDKVCKVIDELFLLDRNMEAVLDECRINLSHDLVVDVLERYR HARKPAMRFFYWAGQRPGFSHDSRTCNAMMSILAKTRQLETMVSMLEDMGEKGLLTMDTFLIAMRAFAAAKERKKAVGMFELMKKYRFKLGAETLNSLLD SLGRAKLAKEAKVLFGRLEHRFTPNLRTYTVLLNGWCKVKNLMEAGRVWNEMIEKGFKPDVVAHNIMLEGLLKSRKRSDAIKLFEIMKAKGPTPDVRSYT ILIRYLCKQSRMEEAIDYFDEMVDSGCEPDAVIYTCLISGFGNQRKMDTVFELLQEMKEKGCPPDAQTYNALIKLMVRRRLPDDAVKVYKKMIQNGMEPT IHSYNMIMKSYFYIRNYEMGLAVWDEMLSRGCCPDDNSYTVLIRGLVSQGRSGDACKYLEEMMEKGMKMPQLDYNKFVADISKAGTPAAFEALAQRLNLV GNFGAASGLARKSEAMNNRNNRHGRATERTSSMGVPEEHEYSYYSPSGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10015741 [exp]	0	1
AT5G38060			unknown protein		Lus10004070 [exp]	1.7	0.8662
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10013818 [exp]	2.4	0.8553
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10037330 [exp]	3.0	0.8550
AT4G17960			unknown protein		Lus10030960 [exp]	4.2	0.8313
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10016361 [exp]	5.4	0.7936
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10038734 [exp]	6.3	0.8237
AT1G76660			unknown protein		Lus10025171 [exp]	10.2	0.8358
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	11.0	0.8353
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	11.9	0.7836
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10020931 [exp]	13.2	0.7610

Compare expression of checked genes

Lus10015741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.