Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07920 968 / 0 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) AT5G63770 590 / 0 ATDGK2 diacylglycerol kinase 2 (.1.2) AT5G57690 85 / 5e-17 ATDGK4 diacylglycerol kinase 4 (.1) AT2G18730 84 / 1e-16 ATDGK3 diacylglycerol kinase 3 (.1) AT4G30340 82 / 4e-16 ATDGK7 diacylglycerol kinase 7 (.1) AT4G28130 76 / 4e-14 DGK6, ATDGK6 diacylglycerol kinase 6 (.1) AT2G20900 74 / 1e-13 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003460 [exp] 1271 / 0 AT5G07920 1050 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10021625 [exp] 1180 / 0 AT5G07920 1101 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10034701 [exp] 801 / 0 AT5G07920 746 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10010896 [exp] 530 / 6e-180 AT5G63770 955 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10012719 [exp] 528 / 5e-179 AT5G63770 957 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10034702 [exp] 392 / 2e-133 AT5G07920 400 / 8e-137 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10015514 [exp] 87 / 1e-17 AT4G30340 707 / 0.0 diacylglycerol kinase 7 (.1) Lus10019987 [exp] 87 / 1e-17 AT4G30340 713 / 0.0 diacylglycerol kinase 7 (.1) Lus10006991 [exp] 85 / 8e-17 AT2G18730 677 / 0.0 diacylglycerol kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066300 [exp] 1056 / 0 AT5G07920 1154 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Potri.007G097900 [exp] 543 / 0 AT5G63770 933 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.005G070900 [exp] 541 / 0 AT5G63770 897 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.018G096700 [exp] 88 / 6e-18 AT2G18730 702 / 0.0 diacylglycerol kinase 3 (.1) Potri.006G174700 [exp] 88 / 6e-18 AT4G30340 670 / 0.0 diacylglycerol kinase 7 (.1) Potri.013G148500 [exp] 72 / 8e-13 AT2G20900 765 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.001G408500 [exp] 71 / 2e-12 AT2G20900 695 / 0.0 diacylglycerol kinase 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00609 [flax] [poplar] DAGK_acc Diacylglycerol kinase accessory domain CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain CL0006 [flax] [poplar] C1 PF00130 [flax] [poplar] C1_1 Phorbol esters/diacylglycerol binding domain (C1 domain)
Representative CDS sequence Show only first row Show all	>Lus10015742 pacid=23167644 polypeptide=Lus10015742 locus=Lus10015742.g ID=Lus10015742.BGIv1.0 annot-version=v1.0 ATGGACGACGATGGAGAAATTGGGATGCTGTTCCCTGGCTGGAACAGCAAGAATCCAACTGATTCCTATCTTTTCATGGTATCCTGCTTCGTTGCTGCTT TAGTTGGGATTTTGACCATAACTTACACGGCTTTTCAATGGAGAAGAAATATCAATCTAAGCTGGATGAAGGCTATAGCCAGATCGAAGAAAAATCCGAA GATTAGGCACAAGGTTCCTGCAGCCCCGCATACATGGGTGCTTGAATCTGCATTTCGTGGGAAGAATCTGAAATGCTGTGTTTGTTTGAAATCCATGTCT CCTTCTCAAACACTCGGCCCTATTGTGGCATCAGATAGTTTTATTCACTGTTGCAGTGTTTGTAGTGCGGCAACTCACCTAGGATGCTCTAGCAATGCAC CCAAGGACTGCAAATGTGTGTCTATGATTGGATATGATAATGTCATGCATCAATGGGCTGTTCGTTGGACTGAAATCATGGATCAACCTGATGAGACTTC CTTTTGTAGTTATTGTGCAGAACCATGTAGCGCATCTTTTCTTGGCGGATCGCCAATATGGTGTTGCTTTTGGTGTCAGCGACTTGTACATGTTGATTGC CACAGCAGTATGTCAAGTGAAACTGGTGATATTTGTGATTTAGGTCCTTTTAGGAGGTTGATTTTATCTCCCCTTTATGTTCGTGAACTTCACCAAAATT TACCAGGTGGGTTTCTGAGTTCAATCACACATGGAGCTAATGAAATTGCTTCATCGGTGCGTGCAAGTATCAGGAGTCAAAGCAAGAAATACAAGCATGA GAACGGAAACTCCATTGAAACTGGAAATAGTGGTGGTATTGGTGATCCGTCCACTGAAAGCGCAGCTGACACCCATCCTTCTGGAAATTGCTGTAATGGT GGGGAGGAACATTGTGCTGGTAGCTTAAATGTAGGAAGTCCTCAACATGATAGTGTGGTTGTGGATAATAAGTTGGAATCAAGTTCTAGTTTGAAAAGGA GCGGTTCACTAAATCAGAAGGATGAATCTCATGTTTTAGGGATGAAACAGAGACATGAGATAAACGATTTGCCGTCTGATGCCAGACCCCTCCTTGTTTT TATTAACAAGAAGAGTGGTGCTCGGCGTGGAGACTCCCTTAAGCAACGCCTGAACTTGCTTCTGAATCCTGTTCAGGTATTCGAGTTGAGTTCAACACAG GGGCCTGAAGTAGGACTTTATCTTTTCAGGAAGGTACCTCACTTTAGGATTCTGGTATGTGGAGGAGATGGGACAGTGGGCTGGGTTCTTGATGCTATAG ACAAACAAAATTTTGTCTCTCCGCCACCTGTAGCTATTCTTCCTGCTGGAACTGGAAATGATCTGGCCAGAGTACTATCCTGGGGAAGTGGTTTGGGGGC ATTGGAAGGACAAGGAGGTGTCGGGTGTGATGCCAAAGTTGCTCTTGAAATTCACAATCTGAGGGAGGAAAATCCCGAGAAGTTCTATAACCAGTTTATG AACAAGGTTCTGTATGCACGAGAGGGCGCAAAGAACATAATGGACCGTACATTCGCAGATTTTCCATGGCAAGTCAGAGTGGAGGTAGACGGGGTAGAGA TAGAGGTCCCAGAGGATACAGAAGGTGTACTTGTTGCAAACATCGGAAGTTACATGGGTGGTGTCGACCTTTGGCAGAATGAGGATGAATATTATGATAA CTTTGATCCACAATCTATGCATGATAAGTTACTTGAAGTTGTGAGCATATCTGGAACGTGGCACTTGGGGAAGCTTCAGGTTGGACTTTCACGTGCTCGT AGACTAGCACAAGGGAAATTGATCAAGATACAGCTGTTTGCTCCTTTGCCTTTACAAATAGACGGGGAGCCTTGGCTTCAGCGACCATGTACCTTACTCG TATCCCATCACAGCCAGCTTCCTAAGAAGAATGAATTGACTGATACGATTGCTGTTCTTGCTGATGACTTTGAGCAGGCGTTTATGCTGAAAAGAGCAGG AGAAGAACCTCTTGGGCATGCAGCTGCTATAATAGCGGACGTACTTGAAAACGCAGAGACTAATAATGTCATTAACGTTTCGCAGAAACGAGCTCTTCTT CACGAGATGGCTGTCAGGCTGTCTTGA
AA sequence Show only first row Show all	>Lus10015742 pacid=23167644 polypeptide=Lus10015742 locus=Lus10015742.g ID=Lus10015742.BGIv1.0 annot-version=v1.0 MDDDGEIGMLFPGWNSKNPTDSYLFMVSCFVAALVGILTITYTAFQWRRNINLSWMKAIARSKKNPKIRHKVPAAPHTWVLESAFRGKNLKCCVCLKSMS PSQTLGPIVASDSFIHCCSVCSAATHLGCSSNAPKDCKCVSMIGYDNVMHQWAVRWTEIMDQPDETSFCSYCAEPCSASFLGGSPIWCCFWCQRLVHVDC HSSMSSETGDICDLGPFRRLILSPLYVRELHQNLPGGFLSSITHGANEIASSVRASIRSQSKKYKHENGNSIETGNSGGIGDPSTESAADTHPSGNCCNG GEEHCAGSLNVGSPQHDSVVVDNKLESSSSLKRSGSLNQKDESHVLGMKQRHEINDLPSDARPLLVFINKKSGARRGDSLKQRLNLLLNPVQVFELSSTQ GPEVGLYLFRKVPHFRILVCGGDGTVGWVLDAIDKQNFVSPPPVAILPAGTGNDLARVLSWGSGLGALEGQGGVGCDAKVALEIHNLREENPEKFYNQFM NKVLYAREGAKNIMDRTFADFPWQVRVEVDGVEIEVPEDTEGVLVANIGSYMGGVDLWQNEDEYYDNFDPQSMHDKLLEVVSISGTWHLGKLQVGLSRAR RLAQGKLIKIQLFAPLPLQIDGEPWLQRPCTLLVSHHSQLPKKNELTDTIAVLADDFEQAFMLKRAGEEPLGHAAAIIADVLENAETNNVINVSQKRALL HEMAVRLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10015742 [exp]	0	1
AT4G29070			Phospholipase A2 family protei...		Lus10035314 [exp]	11.5	0.7317
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10014019 [exp]	18.6	0.7159
AT1G33530			F-box family protein (.1)		Lus10014979 [exp]	19.0	0.6568
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10009631 [exp]	21.8	0.6924
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031833 [exp]	24.2	0.7084
AT1G43900			Protein phosphatase 2C family ...		Lus10042775 [exp]	29.4	0.6927
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031262 [exp]	32.7	0.7008
AT2G27830			unknown protein		Lus10020544 [exp]	34.2	0.6710
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Lus10013472 [exp]	36.4	0.6419
AT3G05670			RING/U-box protein (.1)		Lus10000086 [exp]	36.9	0.6570

Compare expression of checked genes

Lus10015742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.