Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 271 / 5e-86 UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 220 / 3e-66 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 219 / 1e-65 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 215 / 2e-64 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G78270 215 / 3e-64 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22370 212 / 3e-63 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT2G36970 210 / 2e-62 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 209 / 7e-62 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 203 / 4e-60 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT3G46670 192 / 9e-56 UGT76E11 UDP-glucosyl transferase 76E11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015749 [exp] 620 / 0 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 615 / 0 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 602 / 0 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 601 / 0 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 600 / 0 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 567 / 0 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 557 / 0 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10015753 [exp] 398 / 3e-135 AT3G02100 297 / 1e-95 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 388 / 2e-131 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091500 [exp] 339 / 2e-112 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 338 / 2e-112 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 313 / 3e-102 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 309 / 9e-101 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 270 / 3e-85 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 236 / 2e-72 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.016G105300 [exp] 230 / 4e-70 AT1G22380 327 / 8e-107 UDP-glucosyl transferase 85A3 (.1) Potri.016G105400 [exp] 229 / 1e-69 AT1G22380 324 / 6e-106 UDP-glucosyl transferase 85A3 (.1) Potri.005G073766 [exp] 219 / 7e-66 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 219 / 7e-66 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10015744 pacid=23167634 polypeptide=Lus10015744 locus=Lus10015744.g ID=Lus10015744.BGIv1.0 annot-version=v1.0 ATGGCGGCTAAGAAGAAACAAGTAGATGTGCTTCTGGTTCCACATCCAGCACAGGGCCATGTCTTCCCAATGCTCAAGTTAGCACAAAAGCTAACCGACC ATGGCATCAGTGTCACCGTCGTTAATTTCGATTTCGTCCACCTAAAGATTGTGCCAGAGGAGCAGAGCAATGGTGGGAGTGGGATCAAGCTGGTTTCAGT TCCTAACGGATTCGGATCCGATTTCAACGACTCCAATCCGACGATGATAACTGATTGCGTGGAGAAAGTACTTCCAGTTCACTTGCGGAAGTTGCTGATT GATGAGCATCAGCAGGAGTTCAGTTGGGTCATTGCTGATGCATTCCTTTCTGCGGCTTTTGTGGTTGCTAAAGAAAAAGGGATCAGAACTACGGCGTTTT GGACCGCATCAATGGAGAACTTGGCTTCGATTTTGCGTATTCCTCAGCTGATCCAGGATGGTACTATAGATGAAAACGGATCTTTAATAAACGAAGACCT GCCGATTTCCCTGTGTCGGGAAATCCCATCCTGGAAAGCAAACGAATTGCCATGGAGCTGTCAACCTGACGAAATTCAGTCGTTCATGTTCAGACGCTAC TACGTGAACCCAGCAAAGTACTTCGCATTGTTCGACTGCTTCATCGTCAACTCGTTCCACGAACTCGAGCATTCGGCTTTCCAATTGTACCCCAACATCC TCCCAATAGGTCCACTGGTCACAAATTCCACTTCAATAGGAAGCTTCTGGCGCCAGGATCCAACTTGCTTGACCTGGCTTGACAAGCATCCACGGAGGTC GGTCATATACGTTGCATTCGGAAGCATCTCGGCCCTGAATCCGCGACAATTCCAGGAGCTAGCAATGGGTCTAGAAATGACAGGGAAACCTTTCCTTTGG GTGATCAGGGCAGGTTTCGTGAAGGGGGTGTTAGGGTCGTCAGAATCTGATGTTGAATTTCCTGATGGGTTTCTGGAGAGGGTTGCGAACCGTGGGAAGA TTGTGAAGTGGTCGAATCAAGCTGAGGTGCTTTCTCATCCTTCTGTAGCGTGTTTCGTTAGCCACTGCGGGTGGAACTCGACGCTGGATGGTTTGTGGTC TGGAGTTCCGTTCCTGTGCTGGCCGAACTTTACGGATCAGTTTCATAACACGGAGTCCATATGTAAAACTTGGAAGGTTGGGATGAAACTTAAGGTTGAA GGTGATACTGGATTGATCACGATGTTGGAAATTGCAAGCAAAGTTGGAGAAATGTTTGACGATGAGTCCATCAGAGATAATGCAAATGGGTTGATGGGAA TGGCCACGGAGAGTGTGAATGAAGGTGGCTCTTCATTTTGTAATTTCCAGAAGTTTATTAACAAATTGTGCTCTTAA
AA sequence Show only first row Show all	>Lus10015744 pacid=23167634 polypeptide=Lus10015744 locus=Lus10015744.g ID=Lus10015744.BGIv1.0 annot-version=v1.0 MAAKKKQVDVLLVPHPAQGHVFPMLKLAQKLTDHGISVTVVNFDFVHLKIVPEEQSNGGSGIKLVSVPNGFGSDFNDSNPTMITDCVEKVLPVHLRKLLI DEHQQEFSWVIADAFLSAAFVVAKEKGIRTTAFWTASMENLASILRIPQLIQDGTIDENGSLINEDLPISLCREIPSWKANELPWSCQPDEIQSFMFRRY YVNPAKYFALFDCFIVNSFHELEHSAFQLYPNILPIGPLVTNSTSIGSFWRQDPTCLTWLDKHPRRSVIYVAFGSISALNPRQFQELAMGLEMTGKPFLW VIRAGFVKGVLGSSESDVEFPDGFLERVANRGKIVKWSNQAEVLSHPSVACFVSHCGWNSTLDGLWSGVPFLCWPNFTDQFHNTESICKTWKVGMKLKVE GDTGLITMLEIASKVGEMFDDESIRDNANGLMGMATESVNEGGSSFCNFQKFINKLCS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015744 [exp]	0	1
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	3.3	0.8660
AT2G38710			AMMECR1 family (.1.2)		Lus10029750 [exp]	3.9	0.8251
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	5.3	0.8152
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Lus10032244 [exp]	9.2	0.7623
AT2G38710			AMMECR1 family (.1.2)		Lus10029751 [exp]	10.6	0.7741
AT2G38710			AMMECR1 family (.1.2)		Lus10029754 [exp]	15.2	0.7619
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10034259 [exp]	16.9	0.8146
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10042104 [exp]	20.8	0.8350
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10022407 [exp]	22.4	0.7808
AT4G07390			Mannose-P-dolichol utilization...		Lus10021350 [exp]	27.7	0.7958

Compare expression of checked genes

Lus10015744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.