Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 289 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 222 / 1e-66 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 213 / 2e-63 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22340 206 / 8e-61 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G05675 200 / 7e-59 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 200 / 1e-58 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT1G22370 200 / 2e-58 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22400 198 / 9e-58 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 196 / 4e-57 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT2G31790 194 / 1e-56 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015746 [exp] 732 / 0 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 563 / 0 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 557 / 0 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 552 / 0 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 545 / 0 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 543 / 0 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 533 / 0 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10015753 [exp] 402 / 2e-136 AT3G02100 297 / 1e-95 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 383 / 3e-129 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123500 [exp] 369 / 4e-124 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 365 / 2e-122 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 338 / 4e-112 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 332 / 1e-109 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 302 / 1e-97 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 234 / 2e-71 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.005G073800 [exp] 218 / 2e-65 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 218 / 2e-65 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G019400 [exp] 213 / 1e-63 AT3G22250 494 / 3e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G098400 [exp] 213 / 1e-63 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10015745 pacid=23167632 polypeptide=Lus10015745 locus=Lus10015745.g ID=Lus10015745.BGIv1.0 annot-version=v1.0 ATGGCGGCGATGAAGAAGAAGCCTCATGTTCTTCTTGTCCCATACCCAGCACAAGGCCACGTCGTTCCCATGCTTAAGCTGGCACAGAAGCTAGCAGACG ACCACGGCTTCACTGTCACGGTCGTTAATTTGGAGTTCATACACCAAAAGCTCGTTTCGGATGCAACGATATCGGAGCACCAGAGCATCAGCCTGACTGC GATTCCCAACGGATTCGAACTCTCGTCCGTGTCCGGGCAGGCTGAGAGTGTAACCAAGATAATGGAGAACGTAGAAAATGTTCTGCCAATTCACTTAAGA ACCCTACTTGATGTGAAGAAGAATAAGAGGAACAAGTCTGCAGCTGGAGATATCACTTGGCTCATCGGAGATGCATTTCTGTCGGCAGGGGCGTTTCAGG TGGCCAAGGAAATGGGGATCAAAACGGCTGCGTTTTGGACCGGCTCCGCGGCTACCTTGGCCTTGCTACTGCGTATCCCACAGCTGATCCAGGATGGAAT TCTCGATGAAAACGCAGGAACATTGATAAACCGCGGTATGCCAATTTGCCTTTCAAAGGACATCCCTGCATGGCAACCTGACGAATTCCCATGGAGCTGT CAACCTGAACAATTTCAGAGATTTGGTTTCAAGGCCTTCTCCAGCAAGCCATCTGAGAATTCTACACTTTTCGACTGCTTCATCGTCAACTCACTCTACC AACTCGAGCCTGCAGCTTTCCAATTGTTTCCTAAACTCCTCCCAATAGGTCCATTGGTTACAAATTCAACTTCCGGAGGAAATCAGCATAACCAGATTCC AGGAAGCTTTTGGCATCAGGATCAAACCTGCTCGACCTGGCTCGATAAGCATCCTCCGAAATCGGTCGTATACGTAGCGTTCGGAAGCACCACTGCTCTA AACCAGAAGCAATTTCAGGAGCTAGCCACGGGTCTCGAAATGACGAAAAGACCTTTCCTTTGGGTCATCAGGTCAGATTTTGTGAACGGGACAGGATCAT CAGGACAGGAATTTGTAGACGGTTTCCTCGAGAGGGTTGCGAATCGGGGGAAGATTGTGGAGTGGGCGAATCAAGAGGAGGTTCTTTCTCATCGTTCTAC GGCATGTTTCGTGAGCCACTGCGGATGGAACTCCACGTCGGACGGACTGTGGAATGGAGTTCCGTTCCTGTGTTGGCCTTACTTCAGTGATCAGTTTCAT AATAGGGAGGCGATATGTGAAGCTTGGAAGGTTGGTTTGAAACTAAAGGCTGAAGATGAAGATGGGTTGGTTACAAGGTTTGAGATTTGCAGCAGAGTTG AAGAATTGATTTGTGACGCCACCATAAGAGAAAATGCCAGCAAGCTTAGGGAGAATGCCAGAGAGTGTGTGAGTGATGGTGGCACTTCTTTCAGGAATTT TCTCAGTTTTGTTGAAATTTTGTGCTCCTAG
AA sequence Show only first row Show all	>Lus10015745 pacid=23167632 polypeptide=Lus10015745 locus=Lus10015745.g ID=Lus10015745.BGIv1.0 annot-version=v1.0 MAAMKKKPHVLLVPYPAQGHVVPMLKLAQKLADDHGFTVTVVNLEFIHQKLVSDATISEHQSISLTAIPNGFELSSVSGQAESVTKIMENVENVLPIHLR TLLDVKKNKRNKSAAGDITWLIGDAFLSAGAFQVAKEMGIKTAAFWTGSAATLALLLRIPQLIQDGILDENAGTLINRGMPICLSKDIPAWQPDEFPWSC QPEQFQRFGFKAFSSKPSENSTLFDCFIVNSLYQLEPAAFQLFPKLLPIGPLVTNSTSGGNQHNQIPGSFWHQDQTCSTWLDKHPPKSVVYVAFGSTTAL NQKQFQELATGLEMTKRPFLWVIRSDFVNGTGSSGQEFVDGFLERVANRGKIVEWANQEEVLSHRSTACFVSHCGWNSTSDGLWNGVPFLCWPYFSDQFH NREAICEAWKVGLKLKAEDEDGLVTRFEICSRVEELICDATIRENASKLRENARECVSDGGTSFRNFLSFVEILCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015745 [exp]	0	1
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10000556 [exp]	4.5	0.7892
					Lus10008157 [exp]	6.7	0.7955
AT5G22390			Protein of unknown function (D...		Lus10020626 [exp]	7.4	0.8422
AT4G23730			Galactose mutarotase-like supe...		Lus10017549 [exp]	8.4	0.7963
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10015178 [exp]	9.2	0.8200
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	13.7	0.8149
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10031273 [exp]	14.6	0.8282
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	16.2	0.8094
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	26.3	0.7885
AT5G17680			disease resistance protein (TI...		Lus10010223 [exp]	27.7	0.7761

Compare expression of checked genes

Lus10015745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.