Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 300 / 3e-97 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 228 / 4e-69 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 227 / 7e-69 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22380 225 / 5e-68 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22370 220 / 3e-66 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22360 219 / 1e-65 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22340 218 / 2e-65 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT2G36970 218 / 3e-65 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 207 / 1e-61 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT1G05680 204 / 2e-60 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015745 [exp] 732 / 0 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 575 / 0 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 567 / 0 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 548 / 0 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 546 / 0 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 546 / 0 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 542 / 0 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10015753 [exp] 415 / 1e-141 AT3G02100 297 / 1e-95 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 387 / 6e-131 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091500 [exp] 368 / 1e-123 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 363 / 4e-122 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 333 / 2e-110 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 322 / 1e-105 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 276 / 7e-88 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 251 / 3e-78 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.005G073800 [exp] 242 / 1e-74 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 242 / 1e-74 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.002G098400 [exp] 233 / 4e-71 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 228 / 3e-69 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10015746 pacid=23167660 polypeptide=Lus10015746 locus=Lus10015746.g ID=Lus10015746.BGIv1.0 annot-version=v1.0 ATGGCGGCAATGAAGAAGCCTCATGTTCTTCTGGTGCCATACCCAGCGCAAGGCCATGTTATTCCGATGCTGAAGCTGGCGCAGAAGCTAGCAGACCATG GCTTCAATATCACGGTCGTTAATTTTGAGTTTGTCCACCAAAAGCTCGTTTCGTCGCCCGAGCATCAAAGCATCAGGCTCACTGCAATTCCCTTCGAGCT GGAACCCGGATTGGGGCAAGATGATGCAGTGACCAAGTTGACAGAGAGCATAACAAATGCACTGCCAATTCACTTGCGGAATCTAATTCATCAGATGGAG CAAGAGATCACTTGGGTCATTGGTGATGCACTCCTGTCAGCTGGGGTGTTTCAGGTTGCTAAGGAACTAGGGATCAAAACGGCAGCGTTTTGGACGGCCT CCATGGAGAACTTGGCATTCTTACTGAGTATTCCGCAGCTGATCCAGGACCGAATCATAGATGAAAAAGGAACCTTAATAAACAGCAGTTGGCCAGTTTG CCTGTCAAAAGACATCCCTTCCTGGCAACCTAATGAGCTCCCGTGGAGCTGTCAACCTGAAGAATTTCAGAGATTTATTTTCAAGAACTACTCCCTAAAG CCGTCTCAAAATTCTGCACTTTTCGACTGCTTCATCGTCAACTCCTTCCACCAACTCGAGCCGACAGCTTTTCGAATGTTCCCCAAAATCCTGCCAGTAG GTCCACTTGTTATTACAAACTCCACTTCAGGAGGACATCACCAATATAGCCAGGTTCCAGGAAGCTTTTGGCATCAGGATCAAACTTGCGAGACCTGGCT CGACAATCAGCCTCCGAGATCAGTCATATACGTTGCATTCGGCAGCATCGCTGTTCTAAACCAGAAGCAGTTTCAGGAACTGGCGTGGGGTCTTGAAATG ACAAAAAGGCCTTTCCTTTGGGTGATCAGAGCAGATTTTGTGAACAGAACAGGATCATCAGGTCTGGAATTCCCATATGGGTTCCTCGAGAGGGTTGCGA ATCGGGGGAAGATTGTGGAGTGGGCGAATCAAGAGGAGGTGCTTTCTCATCGTTCTACGGCATGTTTCCTGAGCCATTGCGGATGGAACTCCACGTTGGA TGGACTCTGGTGTGGAGTTCCATTCCTGTGCTGGCCTTATTTTACTGATCAGTTTCATAACAAGGAGTCGATATGTGAAGCTTGGAAGGTTGGTTTGAAA CTAAAGGCGGAAGATGGAAATGGGTTGGTTACGAGGTTTGAGATTTGCAGCAGAGTTGAAGAATTGATTGGTGATGCCACCATGAGAGAAAATGCCAGCA AGTTTAGGGAACAGGCCAGAGAGTGTGTTAGTGAAGGTGGCAATTCTTTCAGAGGTTTTCTTAGGTTTGTTGAAACTTTGTGCTCATAG
AA sequence Show only first row Show all	>Lus10015746 pacid=23167660 polypeptide=Lus10015746 locus=Lus10015746.g ID=Lus10015746.BGIv1.0 annot-version=v1.0 MAAMKKPHVLLVPYPAQGHVIPMLKLAQKLADHGFNITVVNFEFVHQKLVSSPEHQSIRLTAIPFELEPGLGQDDAVTKLTESITNALPIHLRNLIHQME QEITWVIGDALLSAGVFQVAKELGIKTAAFWTASMENLAFLLSIPQLIQDRIIDEKGTLINSSWPVCLSKDIPSWQPNELPWSCQPEEFQRFIFKNYSLK PSQNSALFDCFIVNSFHQLEPTAFRMFPKILPVGPLVITNSTSGGHHQYSQVPGSFWHQDQTCETWLDNQPPRSVIYVAFGSIAVLNQKQFQELAWGLEM TKRPFLWVIRADFVNRTGSSGLEFPYGFLERVANRGKIVEWANQEEVLSHRSTACFLSHCGWNSTLDGLWCGVPFLCWPYFTDQFHNKESICEAWKVGLK LKAEDGNGLVTRFEICSRVEELIGDATMRENASKFREQARECVSEGGNSFRGFLRFVETLCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015746 [exp]	0	1
AT1G17860			Kunitz family trypsin and prot...		Lus10007889 [exp]	1.0	0.9347
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10000326 [exp]	2.8	0.9202
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10042210 [exp]	11.0	0.8650
					Lus10041547 [exp]	12.0	0.7853
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	15.2	0.8937
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041831 [exp]	15.4	0.8826
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10014227 [exp]	17.0	0.8836
					Lus10010270 [exp]	17.2	0.8894
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	21.9	0.8993
AT3G05670			RING/U-box protein (.1)		Lus10007973 [exp]	23.9	0.8660

Compare expression of checked genes

Lus10015746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.