Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 273 / 1e-86 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 230 / 9e-70 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22400 227 / 1e-68 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 226 / 4e-68 UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 224 / 2e-67 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 219 / 1e-65 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 216 / 3e-64 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 207 / 3e-61 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT3G22250 199 / 2e-58 UDP-Glycosyltransferase superfamily protein (.1) AT4G15550 199 / 3e-58 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003454 [exp] 776 / 0 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 742 / 0 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 740 / 0 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 703 / 0 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 620 / 0 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 548 / 0 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 544 / 0 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10015752 [exp] 442 / 2e-154 AT3G02100 141 / 3e-38 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 415 / 6e-142 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123500 [exp] 354 / 4e-118 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 352 / 2e-117 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 343 / 6e-114 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 335 / 1e-110 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 315 / 1e-102 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 238 / 8e-73 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 238 / 8e-73 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 238 / 1e-72 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.016G105300 [exp] 224 / 2e-67 AT1G22380 327 / 8e-107 UDP-glucosyl transferase 85A3 (.1) Potri.016G105400 [exp] 224 / 2e-67 AT1G22380 324 / 6e-106 UDP-glucosyl transferase 85A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10015749 pacid=23167652 polypeptide=Lus10015749 locus=Lus10015749.g ID=Lus10015749.BGIv1.0 annot-version=v1.0 ATGGCGACCAAGAAGAAACCACATGTTCTTCTGGTTCCACATCCAGCACAAGGTCATGTCTTCCCAATGCTCAAGTTGGCACATAAGCTGACCGACTACG GAATCAGCGTCACCGTCGCTAATTTGGATTTCATTCACCGCAAGATTGCGCCAGAGGAGACGACGTCCAAGGAGCAGCAGCAGGGCCATGGTACTGGTAT CAGGCTGGTTTCACTTCCTGACGGTAACGGTTCTGATTTCGACATCAACGATGTAGTGAAGTTTGTAGAGACAGTGCACAAAGTACTGCCGTTTCAATTA CGGGAGCTGCTGATTCAGCAGCAGTCTCTAACTCTAAGTAATGATAAAGAGCAGGAGTTCAGTTGGGTGATTGCCGATGCATTCCTTTCTGGAGCGTTTG TAGTAGCTAAGGAATTGGGGATCAAAACGGCCGCGCTTTGGACTGCCGCCATGGAGAATTTCGCTCTGATGCTACGTATTCCTCAACTGATTGAGGCTGG CACTATTGATGAAAACGGATTCTCAACAGACAAAGAGTTGCCGATTTCGATCTCGGAAGAGATACTTGCTTGGAAAGCTAACGAGTTACCATGGAGCGTT CAACCTGAAGAGCGCCAAACCGTGTTTTTCAACACCTCCTATACACATCCATCCAAGCACATCTCGCTTTTCGACCACGTCATTGTCAACTCATTTCATG AACTTGAACCTTCAGCTTTTCAACTGTTTCCAAACTTCCTCCCAATAGGTCCTTTGGTTACAAATTCAACTAATTCGGGAGGAAGCTTTTGGCGTCAGGA TGAAACTTGCCTGACCTGGCTCGACAACCATCCTTCGAAATCAGTCATATACGTCGCATTTGGAAGCATCACAATTCTGAGTCAAAAACAGTTTCAGGAA CTTGCATTGGGACTTGAACTGGCAGGAAGACCATTCCTCTGGGTGATCAGAACAAATTTTGTGCAAGGTCCACCAGGAGAGTCGGGTCTAGAGTTCCCAG ACGGGTACCTCGAAAGGGTTGTGAATATTGGGAAAATAGTGGAGTGGACGAATCAAGAGCGAGTGCTTTCTCACCCTTCCGTAGGATGTTTCCTAAGTCA TTGCGGATGGAACTCCACACTGGAAGGGTTGTGGTGTGGAGTTCCATTTCTGTGCTGGCCTTACTTTTTGGATCAGTTCCATAACAAGGAGTCTATATGT GAAGCCTGGAAGGTTGGTCTGAAACTGAAGGCCGAAGAAGATGGAACTGTTGGAGGATTGATCACCATGTCTGAAATTGCTAGCAAGGTTGAACAACTTC TAAATGATGAAACCATAAAAGGCAATGCAAATAGGTTGAAGGAAGTTGCTAGGGGAACTGTCAATCAGGGTGGCTCCTCTTTTCACAATTTCTTGAGTTT CGTCAACCAATTACGTTCTACTGATGTGGTTTGTGAGTAG
AA sequence Show only first row Show all	>Lus10015749 pacid=23167652 polypeptide=Lus10015749 locus=Lus10015749.g ID=Lus10015749.BGIv1.0 annot-version=v1.0 MATKKKPHVLLVPHPAQGHVFPMLKLAHKLTDYGISVTVANLDFIHRKIAPEETTSKEQQQGHGTGIRLVSLPDGNGSDFDINDVVKFVETVHKVLPFQL RELLIQQQSLTLSNDKEQEFSWVIADAFLSGAFVVAKELGIKTAALWTAAMENFALMLRIPQLIEAGTIDENGFSTDKELPISISEEILAWKANELPWSV QPEERQTVFFNTSYTHPSKHISLFDHVIVNSFHELEPSAFQLFPNFLPIGPLVTNSTNSGGSFWRQDETCLTWLDNHPSKSVIYVAFGSITILSQKQFQE LALGLELAGRPFLWVIRTNFVQGPPGESGLEFPDGYLERVVNIGKIVEWTNQERVLSHPSVGCFLSHCGWNSTLEGLWCGVPFLCWPYFLDQFHNKESIC EAWKVGLKLKAEEDGTVGGLITMSEIASKVEQLLNDETIKGNANRLKEVARGTVNQGGSSFHNFLSFVNQLRSTDVVCE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015749 [exp]	0	1
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10037286 [exp]	1.0	0.8944
AT1G27170			transmembrane receptors;ATP bi...		Lus10002232 [exp]	1.4	0.8874
AT1G33970			P-loop containing nucleoside t...		Lus10003732 [exp]	1.7	0.8861
AT2G04740			ankyrin repeat family protein ...		Lus10006408 [exp]	6.3	0.8234
AT1G61550			S-locus lectin protein kinase ...		Lus10037730 [exp]	6.5	0.8378
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10006342 [exp]	8.9	0.8023
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Lus10009858 [exp]	11.2	0.7940
AT1G03700			Uncharacterised protein family...		Lus10032548 [exp]	15.9	0.7755
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10036622 [exp]	16.9	0.8564
AT4G16950		RPP5	RECOGNITION OF PERONOSPORA PAR...		Lus10020525 [exp]	17.6	0.8469

Compare expression of checked genes

Lus10015749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.