Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 275 / 1e-87 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 195 / 1e-56 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 195 / 1e-56 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22380 193 / 4e-56 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT2G36970 193 / 5e-56 UDP-Glycosyltransferase superfamily protein (.1) AT2G28080 191 / 3e-55 UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 188 / 4e-54 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22370 187 / 7e-54 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT3G22250 179 / 4e-51 UDP-Glycosyltransferase superfamily protein (.1) AT5G59580 177 / 3e-50 UGT76E1 UDP-glucosyl transferase 76E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015753 [exp] 537 / 0 AT3G02100 297 / 1e-95 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 407 / 1e-138 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 402 / 6e-137 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 401 / 2e-136 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 400 / 3e-136 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 388 / 3e-131 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 375 / 2e-126 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 374 / 4e-126 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 372 / 4e-125 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G084900 [exp] 329 / 2e-108 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 327 / 1e-107 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 318 / 2e-104 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 313 / 3e-102 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 304 / 8e-99 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G008100 [exp] 205 / 2e-60 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 202 / 3e-59 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 202 / 3e-59 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.015G071900 [exp] 196 / 3e-57 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.016G020400 [exp] 195 / 6e-57 AT1G22340 483 / 4e-168 UDP-glucosyl transferase 85A7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10015750 pacid=23167665 polypeptide=Lus10015750 locus=Lus10015750.g ID=Lus10015750.BGIv1.0 annot-version=v1.0 ATGGCCAAGCAAGCCCATGTGGTTGTTGTTCCAGTCCCAGCGCAAGGCCATCTATCCCCTCTCATGAAGTTGGCACACAAGTTAGCCAACTCCGGAATCA ATGTCACGGTCATCAACACGGAGACCATACACCAGAAAATTGTTGGTGCAATGCCAGACAAGGGGCGGAGGCAAATAAATGGCAGAGTAAGGCTCGTTGG AGTTCCTGACAGCCTGCATTCTGTGCTCGATCGCAACAATCCGGTGAAACGAATCGAGACCCAAGAGAGAGTAATGCCTGCTCATTTGCGGCGTCTAGTC GAAGAAATCAATACAAACGAGGAGGAGGAGGAGGAGGAGGTGGTTTGTATCATTTCTGATATCTCCCTGGCGTGGCCATTCCACGAGGCTAAGGCAATGG GGATAAAAACGGCTGCGTTTTCTACTCCTAGTGCTGCTAACTTGGCCCTCATTTTGCACCTCCCTGCGCTCATGGGCATCCTCGATCACAATGGATATGC AACAACTAATTCACCAGTCCGTCTCGGGGAAGGGATTTTAGCCTGGGAGATGAACGATTTCCCCTGGAGCTCACCTGGACTCCCTGACGATGTCCAGAAA ACGACATTCCGATTGTGTGGCAACATCGCAGCAAGTCGCGGAAATTTTGACTACATTTTGGTGAACTCATTTCAGGACCTCGAACCATCCGCTACCAAAT TGATTCCAAACATCTACCCAATCGGACCGTTGTTCACTAATAATGATATAACAGGATGCTTTAGTGGAAGCTTGTGGCCCCAAGACCAAACTTGCTTAAA ATGGCTCGACGAGCAAGCTCCCGGGTCAGTCATTTACGTTGCATTTGGGAGCATGGCATCAATCCAGACCCAACAGCAGTTCTCTGAATTGGCACTCGGT CTGGAACTCACCGGCAAGCCCTTTCTATGGGTCGTCAGGCCCGACCATCGAGAATTAGAGTTCCCAGATGGGTTCCTCGAAAAAGTGGGGGATCGAGGCA AAATAGTGGAATGGGCAAATCAAGAGGAAGTGCTTTTGCACCCTTCAATTGCATGTTTCGTGAGCCATTGTGGGTGGAATTCGATATTGGATGGATTGGT AGCCGGGGTTCCGTTTCTGTGCTGGCCTTTTTGTTTTGATCAGTTCCACAACAAGAAGTACATTTGTGAAATTTGGAAGATTGGTTTGGAGTTGAAGCCT GAAAATGGGATGGATGCAGGCATGATTTTGAAGACGGAGATCGCGAGGAAGGTCGATGAGTTGCTTTCCGACGAGACCGTAAAATCCAATTCAATGAAGC TCAGGGAAGCTGCTGCGAGTAGTACTATTGCAGGAGGATCTTCATTCCTCAAGTTTGAAACATTTGTTAGGGATTTGTGCTTTTGA
AA sequence Show only first row Show all	>Lus10015750 pacid=23167665 polypeptide=Lus10015750 locus=Lus10015750.g ID=Lus10015750.BGIv1.0 annot-version=v1.0 MAKQAHVVVVPVPAQGHLSPLMKLAHKLANSGINVTVINTETIHQKIVGAMPDKGRRQINGRVRLVGVPDSLHSVLDRNNPVKRIETQERVMPAHLRRLV EEINTNEEEEEEEVVCIISDISLAWPFHEAKAMGIKTAAFSTPSAANLALILHLPALMGILDHNGYATTNSPVRLGEGILAWEMNDFPWSSPGLPDDVQK TTFRLCGNIAASRGNFDYILVNSFQDLEPSATKLIPNIYPIGPLFTNNDITGCFSGSLWPQDQTCLKWLDEQAPGSVIYVAFGSMASIQTQQQFSELALG LELTGKPFLWVVRPDHRELEFPDGFLEKVGDRGKIVEWANQEEVLLHPSIACFVSHCGWNSILDGLVAGVPFLCWPFCFDQFHNKKYICEIWKIGLELKP ENGMDAGMILKTEIARKVDELLSDETVKSNSMKLREAAASSTIAGGSSFLKFETFVRDLCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015750 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	3.2	1.0000
					Lus10023589 [exp]	5.3	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	5.5	1.0000
					Lus10003536 [exp]	5.8	1.0000
					Lus10012998 [exp]	6.3	1.0000
					Lus10028667 [exp]	6.6	1.0000
					Lus10011078 [exp]	6.9	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	8.8	1.0000
					Lus10011425 [exp]	8.9	1.0000
					Lus10037149 [exp]	9.2	1.0000

Compare expression of checked genes

Lus10015750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.