Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 141 / 3e-38 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 97 / 2e-22 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT4G15500 97 / 4e-22 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1) AT3G22250 96 / 1e-21 UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 92 / 2e-20 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22360 92 / 2e-20 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22370 90 / 1e-19 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22380 90 / 1e-19 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22400 89 / 2e-19 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 88 / 5e-19 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003453 [exp] 553 / 0 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 464 / 2e-163 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 451 / 2e-158 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 442 / 1e-154 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 415 / 4e-144 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 373 / 1e-127 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 328 / 3e-110 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 329 / 4e-110 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 239 / 2e-75 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G119700 [exp] 181 / 5e-53 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 173 / 5e-50 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 171 / 1e-49 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 171 / 3e-49 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 167 / 7e-48 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G105300 [exp] 114 / 3e-28 AT1G22380 327 / 8e-107 UDP-glucosyl transferase 85A3 (.1) Potri.016G105400 [exp] 112 / 2e-27 AT1G22380 324 / 6e-106 UDP-glucosyl transferase 85A3 (.1) Potri.007G095000 [exp] 110 / 5e-27 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.005G073766 [exp] 103 / 1e-24 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 103 / 1e-24 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015752 pacid=23167622 polypeptide=Lus10015752 locus=Lus10015752.g ID=Lus10015752.BGIv1.0 annot-version=v1.0 ATGCGGGAGCTGCTGATGAATCAGCAGCAGTCTCTAAGTAATGATGAAGAGCAAGAGAAGTTCAGTTGGGTCATTGCCGATGCATTCCTTTCTGGAGTGT TTATTGCTGCCAAGGAAATGGGGATCAATATGGCTGCGCTTTGGACTGCCTCGCTGGAGAATTTCGCTCTGATGCTGCGTATTCCTCAACTGATTGAGGC TGGCACTATTGATGAAAACGGATTCTTAATAGACAGAGAGGTAGCGGTTTCGATATCTGAGGAGATACTTGCTTGGAAAGCTAACGAGTTACCGTGGAGT TATCAACCTGAAGAACTCCAGCCCTTTCTTTTCAAAAACTACTATGCCCAGCCATCCAAGCACTATTTGCTTTTCGACCACGTTATAGTCAACTCGTTTC ATGAGCTGGAAGCATCAGTTATTCAATTGTTCCCGCATTTCCTCCCAATAGCTCCTTTGGTTACAAATTCAACTACAGGAGGAAGCTTTTGGCATCAGGA TGAAACTTGCCTGACCTGGCTCGACAAGCATCCTCCAAAATCAGTCATATACGTTGCTTTTGGAAGCATTGCAGTTCTGAGCCAACAGCAGTTTCAGGAA CTTGCATTAGGTCTTGAACTGGCAGGAAAACCATTCCTGTGGGTGATCAGAACAGATTTTTTGCACGGGATGTTTGATGAGCCATTGCGGATGGAATTCA ACGTTGGATGCGTCGTGGTCCGGCTATGTTGGCCTTGTTGTTTTTATCAGTTCCGTAACAAGGAGTCTATATGTGAAGTTTGGAGGGTTGGCCTGAAATT GCAGGCTGGAGATGGAACTGGATTGATCACCATGTCTGAAATTGCTAGCAAAGTTGGAGAACTTCTAAATAATGATACCATAGGAGGTAACACAATTAGG CTGAGGGGACTTGTTCAGGCGAGTGTGAACAACGATGGCACTTCTTTCCACAATTTCTTGAGTTTCATCGATAGTTTGTGTTCTTAA
AA sequence Show only first row Show all	>Lus10015752 pacid=23167622 polypeptide=Lus10015752 locus=Lus10015752.g ID=Lus10015752.BGIv1.0 annot-version=v1.0 MRELLMNQQQSLSNDEEQEKFSWVIADAFLSGVFIAAKEMGINMAALWTASLENFALMLRIPQLIEAGTIDENGFLIDREVAVSISEEILAWKANELPWS YQPEELQPFLFKNYYAQPSKHYLLFDHVIVNSFHELEASVIQLFPHFLPIAPLVTNSTTGGSFWHQDETCLTWLDKHPPKSVIYVAFGSIAVLSQQQFQE LALGLELAGKPFLWVIRTDFLHGMFDEPLRMEFNVGCVVVRLCWPCCFYQFRNKESICEVWRVGLKLQAGDGTGLITMSEIASKVGELLNNDTIGGNTIR LRGLVQASVNNDGTSFHNFLSFIDSLCS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015752 [exp]	0	1
AT1G71870			MATE efflux family protein (.1...		Lus10027277 [exp]	3.3	0.6931
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000852 [exp]	6.3	0.6851
AT3G27050			unknown protein		Lus10010600 [exp]	18.2	0.6083
AT5G57860			Ubiquitin-like superfamily pro...		Lus10036598 [exp]	19.3	0.6899
AT4G21720			unknown protein		Lus10028771 [exp]	26.5	0.6517
AT4G13200			unknown protein		Lus10022803 [exp]	30.6	0.6636
AT5G61310			Cytochrome c oxidase subunit V...		Lus10040012 [exp]	32.7	0.6318
AT1G18680			HNH endonuclease domain-contai...		Lus10015728 [exp]	42.1	0.6540
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10032014 [exp]	42.4	0.6429
AT5G04000			unknown protein		Lus10042034 [exp]	45.7	0.6485

Compare expression of checked genes

Lus10015752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.