Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 281 / 1e-89 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 213 / 2e-63 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22380 204 / 9e-60 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22400 194 / 3e-56 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 194 / 5e-56 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT5G59580 186 / 3e-53 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT3G22250 186 / 4e-53 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 184 / 8e-53 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT2G36970 182 / 8e-52 UDP-Glycosyltransferase superfamily protein (.1) AT1G05675 181 / 1e-51 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015750 [exp] 530 / 0 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 395 / 7e-134 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 394 / 2e-133 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 390 / 1e-131 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 388 / 5e-131 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 383 / 4e-129 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 379 / 7e-128 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 377 / 4e-127 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 376 / 3e-126 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091500 [exp] 327 / 3e-107 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 315 / 7e-103 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 289 / 2e-92 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 285 / 4e-91 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 284 / 2e-90 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G019400 [exp] 204 / 4e-60 AT3G22250 494 / 3e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 203 / 2e-59 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 203 / 2e-59 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G020400 [exp] 200 / 3e-58 AT1G22340 483 / 4e-168 UDP-glucosyl transferase 85A7 (.1) Potri.007G095000 [exp] 198 / 1e-57 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10015753 pacid=23167619 polypeptide=Lus10015753 locus=Lus10015753.g ID=Lus10015753.BGIv1.0 annot-version=v1.0 ATGGCCAAGCAACCTCATGTCTTGGTTGTGCCACTCCCGGCACAAGGCCATCTACTCCCTCTCATGAAGTTGGCGCGCAAATTAGCCAACCGCGGGATCA ACGTCACAGTTATGAACTTGGAGACCATACACCGCAAAATCATTCACGCAATGCCAACTCGAGTGAGGCTCGTTGGAGTTCCTGATGGCCTGGAGCTCGA TCACCGCCACGATCTGGTCAAGCAAATGGAGTGTTTGGAAAGAGGGATGCCGGGTCAGTTGAGGAGCCAGCTGGTTGAGGGGGAGGTGGTTTGTGTGATT GCGGATGTGTCCCTGGCATGGGCGTTCCATGAGGCTAAGGCGATGGGGACCAAAACGGCTGCGTTTTATCCTGCTAGTGCTGCCACCTTGTCCTTGTTGC TGGATATTCCACGTCTTCTTCAGCTTAGGATTTTAGATCATGATGGAGTTGGATTAACAGAATCATCCATTGGAATGGCGAAAGAAATCCCAAGCTGGGA GGCCAACGAGCTCCCCTGGAGCCATCCTGCATATACCGACGAGCTGCGAAAACTGTCATTCCAATCTTGCTGCTTCAACGTCAGAGAATGTTCTCAAAAT TCCGACTACATGTTGGTGAATTCATCCCAAGAACTCGAGCCATCAGCTTTTCGATTGATTCCCAACGCCTTCCCTATAGGCCCGCTGCAAATCAGTACTG ACATAGACCCTGACGACGATACTGATAATTCAGTCCTTGTAGGAAGCCTGTGGCCTGAAGACCAAACTTGCTTAACATGGCTCAACATGCAAGACCAGGG CACAGTCATTTACGTTGCATTTGGGAGCATCGCGACAATAGAAAACCAGCAACAATTCGCTGAATTGGCAATAGCCCTGGAATTCACTGGCAATCCCTTT CTATGGGTGGTCAGGCCTGGCGGATCAGAGTTCCCAGACGGGTTCCTGAAAAGGGTCGGGGATCGAGGCAAAATAGTGGAATGGGCAAATCAAGAGGAGG TGCTTTCGCACCCTTCAATTGCATGTTTTGTGAGCCATTGCGGATGGAACTCTACATTGGACGGCTTGGTAGCCGGAGTTCCGTTCCTGTGCTGGCCTTT CTGTTTTGATCAGTTCCACAACAAGAAGTACATTTGCGAAACTTGGAAGATAGGTTTGGAATTGAAGGCTGAAAATGGGACGGATGTAGGCATCATTACG AATGCAGAAATTGTGAGGAAGCTCGATGAGTTGCTTTATGATGACACCATAAAATCCAATTCAATGAAGCTTCGGGAAATAGCTAGAGATGCTACTTGTG GTAGTACTACTGATACAGGGTCTTCATTCCTCAAGTTTGAAACATTTGTCACTGAGTTGTGTAACACCTTATGCAAATGTCATATCGACAACGTACAAGA GATATCCAAGGACTATAAGAGACAATTAAACCTTAACGGACAAGATGTGTGTTGA
AA sequence Show only first row Show all	>Lus10015753 pacid=23167619 polypeptide=Lus10015753 locus=Lus10015753.g ID=Lus10015753.BGIv1.0 annot-version=v1.0 MAKQPHVLVVPLPAQGHLLPLMKLARKLANRGINVTVMNLETIHRKIIHAMPTRVRLVGVPDGLELDHRHDLVKQMECLERGMPGQLRSQLVEGEVVCVI ADVSLAWAFHEAKAMGTKTAAFYPASAATLSLLLDIPRLLQLRILDHDGVGLTESSIGMAKEIPSWEANELPWSHPAYTDELRKLSFQSCCFNVRECSQN SDYMLVNSSQELEPSAFRLIPNAFPIGPLQISTDIDPDDDTDNSVLVGSLWPEDQTCLTWLNMQDQGTVIYVAFGSIATIENQQQFAELAIALEFTGNPF LWVVRPGGSEFPDGFLKRVGDRGKIVEWANQEEVLSHPSIACFVSHCGWNSTLDGLVAGVPFLCWPFCFDQFHNKKYICETWKIGLELKAENGTDVGIIT NAEIVRKLDELLYDDTIKSNSMKLREIARDATCGSTTDTGSSFLKFETFVTELCNTLCKCHIDNVQEISKDYKRQLNLNGQDVC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015753 [exp]	0	1
AT4G29680			Alkaline-phosphatase-like fami...		Lus10017872 [exp]	1.0	0.9326
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10003234 [exp]	2.0	0.8767
					Lus10027052 [exp]	4.5	0.8184
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10007223 [exp]	4.5	0.8666
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	5.7	0.8740
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10011565 [exp]	6.6	0.8725
AT5G20480		EFR	EF-TU receptor (.1)		Lus10026938 [exp]	7.5	0.8333
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10039647 [exp]	7.5	0.8524
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008524 [exp]	7.7	0.7760
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002392 [exp]	9.4	0.7826

Compare expression of checked genes

Lus10015753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.