Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13170 283 / 2e-95 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT5G50800 249 / 5e-82 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT3G48740 245 / 1e-80 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G50790 243 / 1e-79 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT5G23660 237 / 1e-77 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT4G25010 236 / 5e-77 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT2G39060 199 / 5e-63 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT4G15920 172 / 7e-53 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 161 / 1e-48 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT5G53190 143 / 5e-41 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000310 [exp] 526 / 0 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1) Lus10003143 [exp] 380 / 1e-133 AT5G13170 295 / 4e-100 senescence-associated gene 29 (.1) Lus10011335 [exp] 338 / 3e-117 AT5G13170 268 / 1e-89 senescence-associated gene 29 (.1) Lus10024770 [exp] 236 / 9e-77 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10009782 [exp] 234 / 3e-76 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10016742 [exp] 226 / 8e-73 AT5G50790 291 / 2e-98 Nodulin MtN3 family protein (.1) Lus10022436 [exp] 225 / 2e-72 AT5G50790 285 / 5e-96 Nodulin MtN3 family protein (.1) Lus10023249 [exp] 223 / 4e-72 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10008861 [exp] 222 / 7e-72 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G166800 [exp] 283 / 2e-95 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.001G060900 [exp] 261 / 7e-87 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1) Potri.015G101700 [exp] 254 / 3e-84 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.015G101600 [exp] 229 / 2e-74 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.015G101500 [exp] 228 / 8e-74 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 226 / 6e-73 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.015G101400 [exp] 223 / 5e-72 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.019G030500 [exp] 206 / 1e-65 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.013G014400 [exp] 176 / 6e-54 AT4G15920 209 / 5e-68 Nodulin MtN3 family protein (.1) Potri.013G014500 [exp] 172 / 8e-53 AT4G15920 241 / 2e-80 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10015754 pacid=23167721 polypeptide=Lus10015754 locus=Lus10015754.g ID=Lus10015754.BGIv1.0 annot-version=v1.0 ATGCAGTCCCCTGGAGTTCTGGTCTTTGGTATTTTAGGTAATGTGATATCACTGATGGTGTTCCTGGCTCCTCTGCCGACGTTTTGGCGAATATACAAGA AGAAGACGAGCGAAGGGTACAAATCGATGCCGTATCTGATGGCATTGTTCAGCTCGATGATGTGGCTTTACTACTCACTCCTCAAAAAGCAAGACGCTTT ACTTCTTATGACCATCAACTCCTTCGGCTGTGTTATTGAGACTGTCTACATCGCTCTCTTCATCGCTTACGCCCCCAAAAAGACCAGAGTGAGGTCGATT CTGTTGTTTGTGGGCTTGGACGTCGTGTTGTTCTCTGCCATCCTTGTGGTCGTGCAGTTACTGGTGAAAGCCCATCTAAGGGTCGACGTTCTGGGCTGGA TTTGCGTGGGCTTCGCCGTTAGTGTTTTCGCTGCTCCGTTGACCGTTATGGCGACGGTGATCCGAACCAGAAGCGTAGAGTTCATGCCGTTTTCGCTCTC GTTCTTCTTGACGTTAAGCGCAATGGTTTGGTTTGGATATGGAATGTTCACCCACGACCTTAAAGTTGCCTGCCCGAACGTTTTGGGCTTCTTGTTTGGG CTGGGCCAGATGGTCTTGTACGCTGTTTATCGGAACAAAAGTATAGTTGACGGGAAGGAGCAGGACGAGAAGGAGCTTCAACTTGAACAACAAGACGAGA ACAAATTGCCGGTGAAGATGAAGAGCAACCAACGGAGGAGCGGGTTGGGGATGCCGGAGGTTCACCCGGTGGAAGTTCACGACTCACACAACGGCTATGA TGATGACAACGAAGATACTAGCGAGGTGGACGTTACGAGTCCAGGTCGCGGAAACCAAGATAATTTGCCTGTTTGA
AA sequence Show only first row Show all	>Lus10015754 pacid=23167721 polypeptide=Lus10015754 locus=Lus10015754.g ID=Lus10015754.BGIv1.0 annot-version=v1.0 MQSPGVLVFGILGNVISLMVFLAPLPTFWRIYKKKTSEGYKSMPYLMALFSSMMWLYYSLLKKQDALLLMTINSFGCVIETVYIALFIAYAPKKTRVRSI LLFVGLDVVLFSAILVVVQLLVKAHLRVDVLGWICVGFAVSVFAAPLTVMATVIRTRSVEFMPFSLSFFLTLSAMVWFGYGMFTHDLKVACPNVLGFLFG LGQMVLYAVYRNKSIVDGKEQDEKELQLEQQDENKLPVKMKSNQRRSGLGMPEVHPVEVHDSHNGYDDDNEDTSEVDVTSPGRGNQDNLPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10015754 [exp]	0	1
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10003234 [exp]	1.0	0.9441
AT5G10530			Concanavalin A-like lectin pro...		Lus10033783 [exp]	1.4	0.9124
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10000310 [exp]	3.5	0.8884
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10039647 [exp]	5.0	0.8643
AT5G19340			unknown protein		Lus10010529 [exp]	6.0	0.8584
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10011058 [exp]	7.7	0.8845
AT2G38860		YLS5	Class I glutamine amidotransfe...		Lus10014721 [exp]	8.9	0.8439
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10007223 [exp]	10.4	0.8380
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023698 [exp]	11.8	0.8064
AT4G29680			Alkaline-phosphatase-like fami...		Lus10017872 [exp]	12.4	0.8338

Compare expression of checked genes

Lus10015754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.