Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13160 702 / 0 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G18610 592 / 0 Protein kinase superfamily protein (.1.2) AT5G02800 525 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G20530 491 / 3e-173 Protein kinase superfamily protein (.1) AT1G07870 490 / 4e-172 Protein kinase superfamily protein (.1.2) AT3G07070 481 / 1e-168 Protein kinase superfamily protein (.1) AT2G28590 467 / 3e-163 Protein kinase superfamily protein (.1) AT1G20650 464 / 2e-162 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G24790 456 / 1e-159 Protein kinase superfamily protein (.1) AT4G13190 453 / 4e-158 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033966 [exp] 618 / 0 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 614 / 0 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 546 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 537 / 0 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 529 / 0 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 525 / 0 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 494 / 1e-174 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 491 / 5e-172 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 483 / 2e-169 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060800 [exp] 770 / 0 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 769 / 0 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 623 / 0 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 596 / 0 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 548 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 533 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 525 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 516 / 0 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 500 / 7e-177 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 491 / 4e-173 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10015756 pacid=23167727 polypeptide=Lus10015756 locus=Lus10015756.g ID=Lus10015756.BGIv1.0 annot-version=v1.0 ATGGGTTGTTTCCCTTGTTTCGATTCCAAGGAAGAGGAGACCTTGAATCGAGATGAGAAGTCCGATGATCGGAAACCAACTTCCTTGCCCACTGCTGCTT CCAATATTTCCAAATTATCTTCTGGATCTGAAAGGCTGAGAGCAAGAAGCCTTGGACTGTCCAAAAGGGAATTAACATCTCCCAAGAATGCACCTGCTGG CAATATTGCAGCTCAAACATTTACTTTCCGTGAGCTTGCTGCTGCAACTAAGAATTTTAGGCCCGAGTCCTTCTTAGGGGAAGGGGGGTTCGGGCGTGTG TATAAAGGACGGCTTGAGAGTACCGGTCAGGTTGTTGCTGTTAAGCAATTAGATAGAAATGGGCTACAGGGTAATAGAGAATTTCTCGTGGAGGTTCTCA TGCTTAGCCTTTTGCATCATCCTAATCTCGTGAGCCTTATTGGCTATTGTGCTGATGGTGATCAGCGGCTACTTGTCTATGAGTTCATGCCTTTCGGATC TCTGGAAGATCATCTTCATGATCTTCCACCTGAAAAGGAACCTCTGGACTGGAACACGAGAATGAAGATAGCAGCCGGTGCAGCTAGAGGATTGGAATAT CTGCATGACAAAGCAACCCCTCCTGTTATATACCGAGACTTCAAGTCATCCAACATCCTTCTCCATGATGGATTCCACCCCAAGCTTTCTGATTTCGGGC TAGCAAAGCTCGGTCCCACTGGTGACAAATCACATGTTTCCACCAGAGTTATGGGCACATATGGTTACTGTGCTCCCGAGTATGCCATGACTGGACAACT GACCGTGAAATCTGACGTATATAGCTTTGGAGTAGTATTCTTAGAGCTGATCACTGGACGGAAAGCCATTGATAGCAGCATGCCACATGGAGAGCAGAAC CTTGTCACATGGGCACGACCATTGTTCAACGACCGTAGGAAGTTTTCGAAACTTGCCGATCCCAGACTTCAAGGGCGATATCCGATGAGGGGACTCTACC AGGCTCTAGCAGTGGCTTCAATGTGCATTCAAGAACAGGCTGCGGCTCGACCTCTCATCGGAGATGTAGTCACTGCTCTTTCGTACTTGGCGAACCATGC ATATGAACCAACTGCTGGGAAGAGTTCGGGAGACGATCGGAGATCCAGAGATGAGCGAGGTGGGTTGCTGTCGAGGGCAGAAGATGGAGGAGGCTCTGGA CGGAGATGGGAGCTCGATGGGTTCGATAAGGACGACTCTCCGAGGGAAAATGCCAAGACGAGCAACCGGGATTTGGAAAGAGAGAAGGCGGTCGCAGAGG CCAGGATGTGGGGGGAGAATTGGCGAGAAAAAAGAAGGCAGAGTGCTCAAGGAAGTTCGGATGGAGATGGAAGTAATGGCTAG
AA sequence Show only first row Show all	>Lus10015756 pacid=23167727 polypeptide=Lus10015756 locus=Lus10015756.g ID=Lus10015756.BGIv1.0 annot-version=v1.0 MGCFPCFDSKEEETLNRDEKSDDRKPTSLPTAASNISKLSSGSERLRARSLGLSKRELTSPKNAPAGNIAAQTFTFRELAAATKNFRPESFLGEGGFGRV YKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVSLIGYCADGDQRLLVYEFMPFGSLEDHLHDLPPEKEPLDWNTRMKIAAGAARGLEY LHDKATPPVIYRDFKSSNILLHDGFHPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSSMPHGEQN LVTWARPLFNDRRKFSKLADPRLQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSYLANHAYEPTAGKSSGDDRRSRDERGGLLSRAEDGGGSG RRWELDGFDKDDSPRENAKTSNRDLEREKAVAEARMWGENWREKRRQSAQGSSDGDGSNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10015756 [exp]	0	1
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10031408 [exp]	6.3	0.8741
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10030666 [exp]	7.7	0.8706
AT4G31170			Protein kinase superfamily pro...		Lus10020374 [exp]	7.7	0.8699
AT5G45660			unknown protein		Lus10002778 [exp]	8.5	0.8532
AT1G79660			unknown protein		Lus10024088 [exp]	10.6	0.8556
AT1G16240		ATSYP51, SYP51	syntaxin of plants 51 (.1.2.3)		Lus10002446 [exp]	12.2	0.8166
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10029835 [exp]	12.5	0.8472
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	14.5	0.8614
AT4G29960			unknown protein		Lus10001629 [exp]	14.7	0.8623
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	16.5	0.8463

Compare expression of checked genes

Lus10015756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.