Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13150 582 / 0 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G13990 466 / 6e-156 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT3G14090 319 / 4e-100 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G72470 305 / 9e-95 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT5G58430 305 / 1e-94 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G54090 301 / 3e-93 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G50380 277 / 1e-83 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G03540 272 / 4e-82 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT1G07000 270 / 7e-82 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT5G52340 259 / 3e-77 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037048 [exp] 1040 / 0 AT5G13150 426 / 5e-139 exocyst subunit exo70 family protein C1 (.1) Lus10011334 [exp] 763 / 0 AT5G13150 541 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10003142 [exp] 760 / 0 AT5G13150 548 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10041536 [exp] 514 / 3e-173 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10012555 [exp] 509 / 7e-169 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10013163 [exp] 327 / 2e-105 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10008126 [exp] 331 / 4e-104 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 299 / 2e-92 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10016764 [exp] 300 / 3e-92 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060700 [exp] 689 / 0 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1) Potri.017G068000 [exp] 526 / 5e-179 AT5G13990 640 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.001G325600 [exp] 515 / 1e-174 AT5G13990 662 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.003G068700 [exp] 330 / 4e-104 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.001G166400 [exp] 328 / 2e-103 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.013G152900 [exp] 302 / 2e-93 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.019G124000 [exp] 301 / 4e-93 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.015G094800 [exp] 299 / 4e-92 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 287 / 2e-87 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.010G241800 [exp] 269 / 5e-81 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10015757 pacid=23167722 polypeptide=Lus10015757 locus=Lus10015757.g ID=Lus10015757.BGIv1.0 annot-version=v1.0 ATGGAGGAGCGCCACCTCCCTGAAACCTCCGGGAGCTTATCCGTAACCTGCAACAACACAATTCCTAATTCATCATCCACCCTTCCAGAATCGCCTTCTT CCTGCAACCTAGAACAAGTAGATGGATTCCTGCAACTGCTCTCCCAGCCCGACGCAGCATTTAATTCTGACCCCCTCCGAGTTCCTGACGCTGTGGAGTT GTTGTTCAAATCTATTGAGTCGTTTATCAACAAGCACGAAGATGCGAAATGCGGCTCCAAATTCGGCCAGGACGAGCACCAAGATTCCTCGCTTGTGGCA CATTTGAACCGTCTCTCCAAGTTCGTCAAAATCCTCGGCGATTTCTCAACTACTTCCGATTTTGAGCTTGCATCCACATTCAATCGCGCCACCACGGTTC AGCACACGGCTATGTGTTTCCTTGACAACGAGCTTCGCACCGTTCTCGACGCCACCTTCAAACGCTCCTCCTACGCCGGTGGTGCCGCTACTCCCAATTC CCCTGCATCGTCACTACCTTTCCGCCACGGCAATCTGCAGGAACAATCTCCGTCTTCTTCTTCCAATCAACATCAGGAGGCAGCAAATCCAGCAGCGGCG GTTGATCAGCAATCAAATGCCGACGAAGACGATTTCCCAGGGTACCAGCCAGGAGACATCTGCAACATGAGCAGGATTGTCGCCTGCATGATCTCATCTG GTTACCAAAGCGAGTGTTGCCTGCTGTACGGATCCATCAGGAGGACAGCGCTCAAGAACAAACTAGAAAAGCTCGGTCATGTCAATGTAAGTGCTGAGGA TATTAACAAGATGGAATGGGAAACCCTAGAAGGTGAAATCGCTTCAATAATCGACATTATTAGGCGCTGCTCTTCCTTGCTATTCTCTGCCGAGCGGAAC CTCGGCAACGCTGTTTTCGCCAATCACCCGTCCGTTTACGGGGACATCTTCGCAAATCTGGCTTCCTCGGTCATGGATCGCTTCTTCAATTTCGCGCAAG CCATTACCTTAACCAAATGCTCTGCCGAGAAATTGTTCAAATTCCTTGACCTCTACGAGACGCTCCGTGATTTAGGTCCTGAAATTGAGCATCTATCTTC AAGCAAGAGCACAAGCAGTACTGGTGTGAAATCAGAGATGTACGAGACAATAATCCAAATAGGTGAAGCCGCGGTAAGCATGTTCTGCGATTTGGAGAAC TCAATCCGGCGAGACAATAGTCGGACGGCGGTGCCGAGTGGTACGGTACACCCTTTGACTCGATATACGATGAACTATCTGAAATACGCATGCGAGTACA AGGACGCTCTCGAGCAGGTCTTCCTGCACAAACAAAAAACAGAGGGTGCGTCCACTTGGGAACAATCTACTACTACTGACGCCGACGGCGCTAACGAGGA TGGCACCCCGAAAACGTCTCCGTTTTCCGTCCAATTGAACATGGTGATGGACTTGCTAGACGAAAACCTAGAGATGAAATCCAATCTATACAGAGATCCA GCTCTTCGGCACATTTTCATGATGAACAATGGTAGGTATATCTTGCAGAAGATCAAAAGCTCCCCTGAGATCCACGATATGATGGGGGCTACGTGGTGCC GTCGCCGGTCGTCGGATCTGAGGAAGTACCATAAGGGATACACCAGGGAGACTTGGGGGAGAGTGTTGCAGTGTTTAAGGCACGAAGGTGTGCAGGTAAA TGGGAAAATCATGAAGCAACTGTTGAAAGATAGGTTCAAGTTGTTCAACAATATGATAGAAGAGATACACAAGACGCAAAGTACGTGGATAGTGAGTGAC GAGCAATTGCAGTCCGAGATAAGAGTGTCTGTATCTGCGGTGGTGATTCCAGCGTATAGATCCTTTTTAGGGAGGTTTCAACAGTACATAACACATGGAA GACAAACAGAAAAGTATGTAAAGTACCAACCCGAAGATATTGAAAATTTAATTGAAGGGTTATTCGATGGAAATCCCTCCATAGCTAGGAAAAGAACTTA A
AA sequence Show only first row Show all	>Lus10015757 pacid=23167722 polypeptide=Lus10015757 locus=Lus10015757.g ID=Lus10015757.BGIv1.0 annot-version=v1.0 MEERHLPETSGSLSVTCNNTIPNSSSTLPESPSSCNLEQVDGFLQLLSQPDAAFNSDPLRVPDAVELLFKSIESFINKHEDAKCGSKFGQDEHQDSSLVA HLNRLSKFVKILGDFSTTSDFELASTFNRATTVQHTAMCFLDNELRTVLDATFKRSSYAGGAATPNSPASSLPFRHGNLQEQSPSSSSNQHQEAANPAAA VDQQSNADEDDFPGYQPGDICNMSRIVACMISSGYQSECCLLYGSIRRTALKNKLEKLGHVNVSAEDINKMEWETLEGEIASIIDIIRRCSSLLFSAERN LGNAVFANHPSVYGDIFANLASSVMDRFFNFAQAITLTKCSAEKLFKFLDLYETLRDLGPEIEHLSSSKSTSSTGVKSEMYETIIQIGEAAVSMFCDLEN SIRRDNSRTAVPSGTVHPLTRYTMNYLKYACEYKDALEQVFLHKQKTEGASTWEQSTTTDADGANEDGTPKTSPFSVQLNMVMDLLDENLEMKSNLYRDP ALRHIFMMNNGRYILQKIKSSPEIHDMMGATWCRRRSSDLRKYHKGYTRETWGRVLQCLRHEGVQVNGKIMKQLLKDRFKLFNNMIEEIHKTQSTWIVSD EQLQSEIRVSVSAVVIPAYRSFLGRFQQYITHGRQTEKYVKYQPEDIENLIEGLFDGNPSIARKRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10015757 [exp]	0	1
AT2G04480			unknown protein		Lus10001750 [exp]	23.2	0.7163
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10023599 [exp]	35.7	0.7026
AT1G71430			unknown protein		Lus10040114 [exp]	47.2	0.7026
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10042047 [exp]	50.6	0.7126
AT2G40390			unknown protein		Lus10017423 [exp]	54.5	0.6899
AT4G29390			Ribosomal protein S30 family p...		Lus10002508 [exp]	58.2	0.6965
AT4G14000			Putative methyltransferase fam...		Lus10023222 [exp]	59.5	0.6146
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10031568 [exp]	74.4	0.6888
AT2G45860			unknown protein		Lus10037857 [exp]	76.5	0.6932
AT3G09925			Pollen Ole e 1 allergen and ex...		Lus10023887 [exp]	77.8	0.6034

Compare expression of checked genes

Lus10015757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.