Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037048 [exp] 266 / 3e-80 AT5G13150 426 / 5e-139 exocyst subunit exo70 family protein C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060300 [exp] 820 / 0 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF01979 [flax] [poplar] Amidohydro_1 Amidohydrolase family
Representative CDS sequence Show only first row Show all	>Lus10015758 pacid=23167689 polypeptide=Lus10015758 locus=Lus10015758.g ID=Lus10015758.BGIv1.0 annot-version=v1.0 ATGGAGGCCAGCCGGAAGAACAAATTCGTCGCCGTCTTCCACAATGCTATGATTCTCACTATGGATGGCGACCGGCGAGTCTTCAGAAACGGCGGAATCG TTATCGAACAGGATGTTATAAAATCCATCGGCCAGTCTTCCGATATTCTTTCTGAATTCTCCTCCGTCGCTGACGATATCGTTGACTTCCACGGCCAAAT CCTACTTCCCGGCTTCATCAACACCCACGTCCACACATCGCAGCAGCTCGGCCGAGGGATAGCCGACGATGTTGATTTAGTAACTTGGTTGCACAATCGA ATTTGGCCTTATGAATCCAGCATGACCGAGCAAGATTCATATATCTCTACCCTGCTGTGCGGAATCGAGCTCATACACTCTGGAGTTACTTGCTTTGCTG AAGCAGGAGGGCAGCATGTTTCGGGAATGGCTCGAGCAGTTGATAAGCTTGGTCTACGAGCATGTTTAACTCAGTCAATCATGGACTCCGGCGAAGGACT ACCTCCTTCTTGGGCCAATCGAACTACTGATGATTGTATACAGTATCAAAAACAGCTTCACCACAAGTACAATAACACTGCTGATGGGCGCATTCGAGTG TGGTTTGGAATTAGGCAAGTGATGAATTCAACTGATCGCCTGCTCATTGAAACAAGAGATGCAGCTCGGGATCTGAAAACTGGTATCCACATGCACATTG CAGAGATACCATATGAAAATCAATTCGTGAAGGATACACGGAAAGTTGAACATGGAACTGTTACATTCTTGGAAGGGATAGAGTTCCTGCAGAATAACCT ACTTGCAGCCCATAGTGTGTGGATTGACAATACAGAGATTGGTTTCCTTGCAAAAGCTGGAGTCAAGGTGTCTCACTGCCCGGCTGCTGCAATGCGAATG CTTGGATTTGCCCCAATTAGAGAGATGCTTCACTCAGGCATTTGTGTCTCCTTGGGAACGGATGGGGCTCCATCTAATAACAGAATGAGCATGGTTGATG AAATGTATCTAGCTTCTTTGATTAACAAAGGACGGGAAGTTCATGCAAAAGGAACGACGGATCCTACAGCTCTCCCAGCAGAAACAGTTCTTAGCATGGC AACCATAAACGGTGCCAAGACAGTACTTTGGGATGATGAGATAGGATCACTGGAGGTTGGGAAAAAGGCTGACTTAATCGTGATCAATCCCAACTCTTGG TCTATGGTTCCGACACATGACAGCATTTCCAGCCTTGTATATAGCATGAGAAGTGAGAATATCGTTTCAGTAATGTGTAATGGCAAGTGGATTATGAAGG ACAAGAAGATTGTGAATGTAGACGAGGGAGAAGTAATCGCCGCAGCGAAGGAAGCTTCTGCAAAGCTATTGACTAGGGCAGGTATCAGCTTACCAAACAG AATGAATGTCATCTGA
AA sequence Show only first row Show all	>Lus10015758 pacid=23167689 polypeptide=Lus10015758 locus=Lus10015758.g ID=Lus10015758.BGIv1.0 annot-version=v1.0 MEASRKNKFVAVFHNAMILTMDGDRRVFRNGGIVIEQDVIKSIGQSSDILSEFSSVADDIVDFHGQILLPGFINTHVHTSQQLGRGIADDVDLVTWLHNR IWPYESSMTEQDSYISTLLCGIELIHSGVTCFAEAGGQHVSGMARAVDKLGLRACLTQSIMDSGEGLPPSWANRTTDDCIQYQKQLHHKYNNTADGRIRV WFGIRQVMNSTDRLLIETRDAARDLKTGIHMHIAEIPYENQFVKDTRKVEHGTVTFLEGIEFLQNNLLAAHSVWIDNTEIGFLAKAGVKVSHCPAAAMRM LGFAPIREMLHSGICVSLGTDGAPSNNRMSMVDEMYLASLINKGREVHAKGTTDPTALPAETVLSMATINGAKTVLWDDEIGSLEVGKKADLIVINPNSW SMVPTHDSISSLVYSMRSENIVSVMCNGKWIMKDKKIVNVDEGEVIAAAKEASAKLLTRAGISLPNRMNVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015758 [exp]	0	1
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	1.4	0.9708
AT4G33740			unknown protein		Lus10020507 [exp]	2.4	0.9572
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	3.5	0.9582
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10033533 [exp]	3.7	0.9391
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	4.9	0.9388
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001016 [exp]	5.5	0.9192
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	5.7	0.9474
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	6.7	0.9473
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10007663 [exp]	6.7	0.9381
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	7.3	0.9454

Compare expression of checked genes

Lus10015758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.