Plant FIBer expression Database

Lus10015759 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35450 206 / 2e-65 catalytics;hydrolases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037047
[exp]
301 / 1e-102 AT2G35450 450 / 2e-159 catalytics;hydrolases (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G167600
[exp]
217 / 1e-69 AT2G35450 468 / 1e-166 catalytics;hydrolases (.1)
PFAM info
Representative CDS sequence
>Lus10015759 pacid=23167617 polypeptide=Lus10015759 locus=Lus10015759.g ID=Lus10015759.BGIv1.0 annot-version=v1.0
ATGGCAACCAGGCTCCTTTCTGTTTCAGCTGCATCAGCACTCCATCGCCATCGCCAATCATGGCTTCCCTTTCCCCACAGCCCATCAACAATTCAAGTAC
GTCCTGCTCCCGCTGCAGCGATGGCTACCAACACTGAAGCTGAAAGTGGAAGCACAAAGCTCTCTTCGAAGATCATCGATTCACATCTCCACGCTGCAGA
TAAATACCCTTATTTTCCTGGCCAAGAACCCACTTTGCCTGGACATGTAGATTTCCTCCTCCAGTGCATGGAAGAAGCTGGTGTGGAGGGCGCCCTCACT
GTGCAGCCTATTAATCACAAATTTGATCATTCTTTACTCACTAGTGTTTTGAAGAAGTATCCCACCAAGTTTGTTGGCTGCTGCCTTGCAAACCCTGCAG
AAGATGGAACTGGAATCAAGCAGCTTGAGCAGCTTGTTCTAGAGATGACAAATGAAGTTGGGAAGGCGTTGTTGTGTCGGGCTGGCGAACTTGGAGTACC
CGTTGGGTTAATGTGCTTTAAGCTGTGCACGGAATTTCATTCCACGCCAGTAGTGATAGACCATTTGGGTTTCTGCAAACTTCCAATGTTCCCACAGGTA
AAGAAACACTACAAAATGACACGACTTCGACTTCAGTATTGTGATCATGTTCCTTCCATTGAATTGAATGCCGTTGAAGGTTTTGGTAGTGACAGATGCT
AA
AA sequence
>Lus10015759 pacid=23167617 polypeptide=Lus10015759 locus=Lus10015759.g ID=Lus10015759.BGIv1.0 annot-version=v1.0
MATRLLSVSAASALHRHRQSWLPFPHSPSTIQVRPAPAAAMATNTEAESGSTKLSSKIIDSHLHAADKYPYFPGQEPTLPGHVDFLLQCMEEAGVEGALT
VQPINHKFDHSLLTSVLKKYPTKFVGCCLANPAEDGTGIKQLEQLVLEMTNEVGKALLCRAGELGVPVGLMCFKLCTEFHSTPVVIDHLGFCKLPMFPQV
KKHYKMTRLRLQYCDHVPSIELNAVEGFGSDRC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35450 catalytics;hydrolases (.1) Lus10015759
[exp]
0 1
AT2G44140 Peptidase family C54 protein (... Lus10027079
[exp]
3.7 0.9511
AT5G26240 ATCLC-D, CLC-D chloride channel D (.1) Lus10002453
[exp]
3.7 0.9513
AT3G21260 GLTP3 GLYCOLIPID TRANSFER PROTEIN 3,... Lus10029765
[exp]
4.0 0.9404
AT4G02120 CTP synthase family protein (.... Lus10025042
[exp]
4.0 0.9470
AT2G44270 ROL5 repressor of lrx1 (.1.2) Lus10009739
[exp]
5.1 0.9426
AT2G01220 Nucleotidylyl transferase supe... Lus10032989
[exp]
6.6 0.9432
AT5G13760 Plasma-membrane choline transp... Lus10039585
[exp]
10.4 0.9385
AT1G49350 pfkB-like carbohydrate kinase ... Lus10010290
[exp]
11.0 0.9348
AT3G07580 unknown protein Lus10016076
[exp]
11.2 0.9477
Lus10024551
[exp]
11.3 0.9100

Lus10015759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.