Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27010 159 / 3e-47 TCP ATTCP20, PCF1, AT-TCP20 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) AT1G69690 134 / 2e-37 TCP AtTCP15, TCP15 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) AT3G47620 131 / 2e-35 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) AT2G45680 129 / 2e-35 TCP TCP9 TCP family transcription factor (.1) AT1G58100 126 / 4e-34 TCP TCP8 TCP domain protein 8, TCP family transcription factor (.1.2) AT5G51910 124 / 6e-34 TCP TCP19 TCP family transcription factor (.1.2) AT5G23280 122 / 9e-34 TCP TCP7 TCP family transcription factor (.1) AT1G72010 124 / 3e-33 TCP TCP22 TCP family transcription factor (.1) AT5G08330 120 / 3e-33 TCP AtTCP11, CHE, TCP21 TCP domain protein 11, TCP family transcription factor (.1) AT1G35560 120 / 3e-32 TCP TCP23 TCP family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037046 [exp] 181 / 2e-58 AT3G27010 145 / 5e-44 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10032022 [exp] 143 / 5e-41 AT3G27010 234 / 2e-75 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10037190 [exp] 125 / 2e-33 AT1G69690 172 / 9e-50 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) Lus10010177 [exp] 119 / 4e-32 AT5G23280 186 / 1e-57 TCP family transcription factor (.1) Lus10013814 [exp] 103 / 5e-27 AT3G47620 119 / 2e-32 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10041328 [exp] 97 / 3e-24 AT3G47620 93 / 3e-22 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10035193 [exp] 97 / 3e-24 AT3G27010 156 / 6e-47 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10008621 [exp] 96 / 2e-23 AT3G47620 140 / 4e-38 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10008444 [exp] 70 / 2e-15 AT1G58100 104 / 5e-28 TCP domain protein 8, TCP family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060000 [exp] 164 / 1e-49 AT3G27010 215 / 2e-68 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.003G167900 [exp] 152 / 8e-45 AT3G27010 212 / 3e-67 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.017G068748 [exp] 150 / 1e-43 AT3G27010 231 / 3e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.001G327100 [exp] 149 / 3e-43 AT3G27010 230 / 6e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.011G055500 [exp] 134 / 7e-37 AT3G47620 173 / 2e-49 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.004G046300 [exp] 132 / 2e-36 AT3G47620 182 / 2e-52 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.014G078500 [exp] 129 / 1e-35 AT2G45680 257 / 1e-83 TCP family transcription factor (.1) Potri.002G152200 [exp] 124 / 1e-33 AT2G45680 286 / 6e-95 TCP family transcription factor (.1) Potri.019G081800 [exp] 125 / 2e-33 AT1G72010 220 / 5e-68 TCP family transcription factor (.1) Potri.013G110700 [exp] 124 / 2e-33 AT1G35560 224 / 9e-70 TCP family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10015760 pacid=23167714 polypeptide=Lus10015760 locus=Lus10015760.g ID=Lus10015760.BGIv1.0 annot-version=v1.0 ATGGAACAACAACAACAACAACCAAAGGTCCCAAACCACCTTGATGATCCACACCAAAACAGCAACAACCCTCTTTCGGCAATGAAAGACGTTCAAATCA CATCACTTGTTCCAAACAGCAGTACAAAGAAGCAGCAGAGTTTAGGTCCGAAGAGGAGTTCGAACAAGGACAGGCACAAGAAAGTGGACGGAAGAGGGAG AAGGATCAGGATGCCAGCTTTATGCGCCGCTAGGATCTTCCAGCTGACTCGAGAATTGGGTCACAAATCCGACGGCGAGACCATCCAGTGGCTTCTGAAC CAATCTGAGCCGTCCATCATTGCAGCCACCGGCACCGGGACAATTCCGGCCTCTGCTCTTGCCGCTGCAGGGTCCTCTGTTTCTAATTCGGAGATGCAGG GGAGCTCTGTTTCTTTCTCTGCTGGGAACAATTGGGCAGCCTTGATGAATGCCAATTTGCAGATCGCGAGATCTAATTTGACTGCTGGGATTTGGCAACC TACTAATAATACTACTATTCACGGTGGTGGGATGGAATTCCCGAATATAAATGCCGGGTTGATGAGCTTTTACTCTTCCATGTTTAGTGGCGGGTCCGGT AATATTAGTCCGGGTTTGGAGCTGGGGCTTTCGCAAGATGGAGGATTGAACAATTTGAACTCTCAATTCTATCAGCAGATGGCTCATAATCAGCAACAAC AGCAAAAGGAACAGTCTTCCGATTCTCGTGGATCCAGGCAGTAG
AA sequence Show only first row Show all	>Lus10015760 pacid=23167714 polypeptide=Lus10015760 locus=Lus10015760.g ID=Lus10015760.BGIv1.0 annot-version=v1.0 MEQQQQQPKVPNHLDDPHQNSNNPLSAMKDVQITSLVPNSSTKKQQSLGPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLN QSEPSIIAATGTGTIPASALAAAGSSVSNSEMQGSSVSFSAGNNWAALMNANLQIARSNLTAGIWQPTNNTTIHGGGMEFPNINAGLMSFYSSMFSGGSG NISPGLELGLSQDGGLNNLNSQFYQQMAHNQQQQQKEQSSDSRGSRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10015760 [exp]	0	1
					Lus10031697 [exp]	2.0	0.8270
AT1G30040		ATGA2OX2	GIBBERELLIN 2-OXIDASE 2, gibbe...		Lus10023311 [exp]	5.1	0.7547
AT2G27500			Glycosyl hydrolase superfamily...		Lus10020618 [exp]	8.9	0.7615
AT5G02420			unknown protein		Lus10038653 [exp]	11.0	0.7532
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10017915 [exp]	13.9	0.6951
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Lus10022868 [exp]	14.7	0.8393
					Lus10030114 [exp]	20.3	0.7878
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10042940 [exp]	27.9	0.7749
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Lus10023719 [exp]	29.4	0.7745
AT1G06980			unknown protein		Lus10025927 [exp]	34.0	0.7844

Compare expression of checked genes

Lus10015760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.